2. melonnpanModel-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
3. graphlanHigh-quality circular representations of taxonomic and phylogenetic trees
4. kneaddataQuality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
5. biobakery workflowsbioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
6. humannHUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
7. Maaslin2MaAsLin2: Microbiome Multivariate Association with Linear Models