1. Brainrender
a python based software for visualization of neuroanatomical and morphological data.
2. brainreg-segment
Segmentation of 3D shapes in a common anatomical space
3. slicereg
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
4. bg-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
5. cellfinder
Automated 3D cell detection and registration of whole-brain images
6. brainreg
Automated 3D brain registration with support for multiple species and atlases.
1-6 of 6 user projects