All Git Users → oschwengers

3 open source projects by oschwengers

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Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

✭ 52

python Nextflow shell Common Workflow Language bioinformatics ngs microbiology bacteria wgs contigs plasmids

2. referenceseeker

Rapid determination of appropriate reference genomes.

✭ 65

python Nextflow shell TeX bioinformatics microbiology wgs mash ani refseq reference-genomes

A scalable bacterial genome assembly, annotation and analysis pipeline

✭ 47

groovy javascript java shell CSS Nextflow Dockerfile bioinformatics annotation ngs amr bacteria

1-3 of 3 user projects