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Top 8 microbiology open source projects

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

✭ 52

python Nextflow shell Common Workflow Language bioinformatics ngs microbiology bacteria wgs contigs plasmids

referenceseeker

Rapid determination of appropriate reference genomes.

✭ 65

python Nextflow shell TeX bioinformatics microbiology wgs mash ani refseq reference-genomes

get phylomarkers

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using coalescent and concatenation approaches

A MALDI Mass Spectrometry Bioinformatics Platform

✭ 20

r CSS SCSS Less javascript shiny microbiology mass-spectrometry

Metagenomic pipeline and other general scripts used in the lab.

✭ 33

perl python shell Makefile XSLT microbiology umich ngs-analysis geomicrobiology

Collection of commonly used RDP Tools for easy building

✭ 44

Makefile bioinformatics microbiology microbiome bayesian-classifiers 16s sequence-alignment

bac-genomics-scripts

Collection of scripts for bacterial genomics

✭ 39

perl shell science unix opensource bioinformatics annotation genomics ngs sequencing computational-biology microbial-genomics blast microbiology mlst bioperl scripts-collection

scripts and notes for learning

✭ 29

Jupyter Notebook bioinformatics jupyter bokeh microbiology pyviz

1-8 of 8 microbiology projects