Top 9 ngs-analysis open source projects

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Utilities for analyzing next generation sequencing data.

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Ultrafast sequence typing and gene detection from NGS raw reads

Metagenomic pipeline and other general scripts used in the lab.

Project Manager for NGS data analysis

A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform