All Categories → No Category → denovo-assembly

Top 4 denovo-assembly open source projects

De novo assembly based variant calling pipeline for Illumina short reads

✭ 98

TeX javascript perl Makefile shell bioinformatics genomics variant-calling denovo-assembly

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

✭ 18

Nextflow shell r python Dockerfile rna-seq annotation transcriptomics denovo-assembly rna-seq-pipeline nextflow-pipeline non-model-species

💾 📃 "Reads to report" for public health and clinical microbiology

✭ 111

perl Raku shell HTML CSS PHP Makefile public-health report variant-calling bacteria fastq phylogenomics denovo-assembly genotyping resistome virulome

A WGS de novo assembler based on the FMD-index for large genomes

✭ 74

c d perl C++bioinformatics genomics denovo-assembly

1-4 of 4 denovo-assembly projects