All Categories → No Category → genotyping

Top 6 genotyping open source projects

Genotyping of segregating mobile elements insertions

✭ 15

perl python shell bioinformatics vcf alu transposons transposable-elements genotype-likelihoods genotyping short-reads

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

✭ 42

python shell rna-seq single-cell genetic-variants genotyping

Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

✭ 18

C++TeX Makefile c r CMake bioinformatics snps algorithms computational-biology data-structures genotyping

💾 📃 "Reads to report" for public health and clinical microbiology

✭ 111

perl Raku shell HTML CSS PHP Makefile public-health report variant-calling bacteria fastq phylogenomics denovo-assembly genotyping resistome virulome

Efficient genotyping bi-allelic SNPs on single cells

✭ 47

c shell Makefile M4 python single-cell genetic-variants genotyping

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

✭ 45

python ngs circrna structural-variation circrna-prediction genotyping circrnas eccdna ecdna circular-dna microdna

1-6 of 6 genotyping projects