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Top 5 metabolic-models open source projects

Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

✭ 23

Jupyter Notebook python Roff machine-learning metabolic-models genome-scale-models metabolic-flux-analysis biomass-objective-function

cobrame

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

✭ 30

python Dockerfile shell systems-biology computational-biology gene-expression metabolism cobra cobrapy metabolic-models

psamm

Curation and analysis of metabolic models

✭ 32

python bioinformatics metabolic-models metabolic-network

CNApy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

✭ 27

python bioinformatics systems-biology computational-biology constraint-programming cobra metabolic-models sbml flux-balance-analysis metabolic-reconstruction constraint-based-modeling fba metabolic-engineering flux-variability stoichiometric-modeling fva metabolic-networks constraint-based-analysis constraint-based-reconstruction

yeast-GEM

The consensus GEM for Saccharomyces cerevisiae

✭ 72

matlab Jupyter Notebook python biology systems-biology consensus reconstruction hacktoberfest yeast metabolic-models genome-scale-models saccharomyces-cerevisiae standard-gem

1-5 of 5 metabolic-models projects