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Top 4 constraint-based-modeling open source projects

COBREXA.jl

Constraint-Based Reconstruction and EXascale Analysis

✭ 21

julia hpc high-performance cobra exascale constraint-based-modeling exascale-analysis

embl gems

EMBL GEMs: A collection of GEnome-scale Models for bacterial species

✭ 20

metabolism constraint-based-modeling genome-scale-models

CNApy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

✭ 27

python bioinformatics systems-biology computational-biology constraint-programming cobra metabolic-models sbml flux-balance-analysis metabolic-reconstruction constraint-based-modeling fba metabolic-engineering flux-variability stoichiometric-modeling fva metabolic-networks constraint-based-analysis constraint-based-reconstruction

pycsp3

A Python Library for modeling combinatorial constrained problems

✭ 39

python prolog c Yacc Makefile java Roff library modeling constraint-satisfaction-problem constraints constrained-optimization constraint-programming modeling-language modeling-tool constraint-based-modeling xcsp3

1-4 of 4 constraint-based-modeling projects