639 Open source projects that are alternatives of or similar to dee2

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Version 2.1.0 released

Reference-based transcript discovery from long RNA read

An ontology of cell types

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A tool to identify, orient, trim and rescue full length cDNA reads

Manhattan plot Generator

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Resource of human chromosome schematics & images

A curated list of awesome bioinformatics software.

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

Pipeline for annotating genomes using long read transcriptomics data with pinfish

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

BACNET is a Java based platform to develop website for multi-omics analysis

Genome-wide imputation pipeline

Forward-time simulation in Python using fwdpp

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

At present contains scraped data from around 1500 problems present on the site. More to follow....

WebAssembly modules for genomics

📚 social networks from novels

A collection of Jupyter Notebooks used in conferences or just to have some snippets.

Latest Data Science Materials

No description or website provided.

Spark VCF data source implementation for Dataframes

heidi : tidy data in Haskell

The objective of this Burp Suite extension is the flexible and dynamic extraction, correlation, and structured presentation of information from the Burp Suite project as well as the flexible and dynamic on-the-fly modification of outgoing or incoming HTTP requests using Python scripts. Thus, Turbo Data Miner shall aid in gaining a better and fas…

Command line utility for manipulating Illumina-generated FastQ files.

MERlin is an extensible analysis pipeline applied to decoding MERFISH data

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

Differential expression analysis for single-cell RNA-seq data.

AI based web-wrapper for web-content-extraction

Multilocus sequence typing by blast using the schemes from PubMLST

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Transcripts annotation and GO enrichment Fisher tests

kallisto | bustools workflow for pre-processing single-cell RNA-seq data

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

🐳 Bio-dockers: dockerized bioinformatic tools

REPO MOVED TO https://github.com/repetere/jsonstack-data - Data Science and Machine learning in JavaScript

Python toolbox to evaluate graph vulnerability and robustness (CIKM 2021)

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

Lightweight and Fast; RNA-seq quantification at the event-level

A module for allowing the use of multiple metric functions in scikit's cross_val_score

Автоматизация поиска и исследования вакансий с сайта hh.ru (Headhunter) с помощью методов Python. Классификация данных, поиск статистических параметров.

GREIN : GEO RNA-seq Experiments Interactive Navigator

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Bioconductor package for management of multi-assay data

No description or website provided.

Processing of single cell RNAseq data for the recovery of TCRs in python

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

Nextflow basic tutorial for newbie users

Python-based UCSC genome browser snapshot-taker and gallery-maker

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Data Mining algorithms for IDMW632C course at IIIT Allahabad, 6th semester

A collection of ML related stuff including notebooks, codes and a curated list of various useful resources such as books and softwares. Almost everything mentioned here is free (as speech not free food) or open-source.