529 Open source projects that are alternatives of or similar to 2020plus

A simple command-line tool to download data from Joint Genome Institute databases

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Predict plasmids from uncorrected long read data

pymzML - an interface between Python and mzML Mass spectrometry Files

Text mining cancer biomarkers for the CIVIC database

Demonstrating best practices for bioinformatics command line tools

My own tools code for NGS data analysis (Next Generation Sequencing)

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Cancer-dedicated gene set interpretation

GCP Essentials for Bioinformatics Researchers

Sample search by metadata and features

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(BOW, TF-IDF, Word2Vec, BERT) Word Embeddings + (SVM, Naive Bayes, Decision Tree, Random Forest) Base Classifiers + Pre-trained BERT on Tensorflow Hub + 1-D CNN and Bi-Directional LSTM on IMDB Movie Reviews Dataset

Genomics Extension for SQLite

An open-access bioinformatics text

MOLGENIS - for scientific data: management, exploration, integration and analysis.

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A curated list of awesome Bioinformatics libraries and software.

Examples using Clustergrammer2 to explore high-dimensional datasets.

Post-analysis of immune repertoire sequencing data

A basic framework for pulmonary nodule detection and characterization in CT

Bioinformatics Workbook repository

Unsupervised domain adaptation method for relation extraction

Conda recipes for the bioconda channel.

Predicting the winner of 2019 cricket world cup using random forest algorithm

SquiggleKit: A toolkit for manipulating nanopore signal data

Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.

GO enrichment with python -- pandas meets networkx

Master's degree project: Development of a trading algorithm which uses supervised machine learning classification techniques to generate buy/sell signals

MyGene.info: A BioThings API for gene annotations

Fast and flexible ORF finder

A fast whole-genome aligner based on de Bruijn graphs

Top 5th percentile solution to the Kaggle knowledge problem - Bike Sharing Demand

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

VirNet: A deep attention model for viral reads identification

Robust and efficient workflows using a simple language agnostic approach

Jupyter Notebooks and miscellaneous

Flexible genotype query among 30,000+ samples whole-genome

An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

A Random Survival Forest implementation for python inspired by Ishwaran et al. - Easily understandable, adaptable and extendable.

compacted de Bruijn graph construction in low memory

📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

🌈Scaffold genome sequence assemblies using linked read sequencing data

bitcoin prediction algorithms

Genome inference from a population reference graph

📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

LAMBDA – the Local Aligner for Massive Biological DatA

Ruby Scoring API for PMML

Model and predict short DNA sequence features with neural networks

🚦 Run Picard on BAM files and collate 90 metrics into one file.

A tool for visualizing the structure and performance of Random Forests 🌳

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

The uncompromising Snakemake code formatter

WebLogo 3: Sequence Logos redrawn

Phylogenetic trees in Julia

A fast 23andMe genome text file parser, now superseded by arv

Fast alignment and preprocessing of chromatin profiles

Machine learning algorithm such as KNN,Naive Bayes,Logistic Regression,SVM,Decision Trees,Random Forest,k means and Truncated SVD on amazon fine food review

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary