639 Open source projects that are alternatives of or similar to Anvio

Plant image analysis using OpenCV

Data and analysis for the Splatter paper

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A collection of scripts and notes related to genomics and bioinformatics

Official code repository for GATK versions 4 and up

NGLess: NGS with less work

UGENE is free open-source cross-platform bioinformatics software

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Data intensive science for everyone.

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Java utilities for Bioinformatics

Signal-level algorithms for MinION data

Curated (meta)list of resources for Biology.

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MMseqs2 app to run on your workstation or servers

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chemical graph theory library for JavaScript

Scientific measurement library for instruments, experiments, and live-plotting

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

De novo assembly based variant calling pipeline for Illumina short reads

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[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

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A maintained extension collection for Inkscape 1.0+, working on Windows and Linux

micca - MICrobial Community Analysis

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Interactive Multiphysics Simulation for Everyone

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Experimental code for loading/saving XArray DataArrays to Geographic Rasters using rasterio

No description or website provided.

The uncompromising Snakemake code formatter

OpenFLUID framework and applications

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

COBRApy is a package for constraint-based modeling of metabolic networks.

A React web application to query and share any PostgreSQL database.

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

Sample search by metadata and features

Curated list of bioinformatics formats and publications

Build and maintain multiple custom conda environments all in once place.

A D library for computational biology and bioinformatics

Client for the Crossref API

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Example client programs for Saphetor's VarSome annotation API

WebLogo 3: Sequence Logos redrawn

An Innovative Salient Object Detection Using Center-Dark Channel Prior

Earl Grey: A fully automated TE curation and annotation pipeline

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No description or website provided.

A fast 23andMe genome text file parser, now superseded by arv

annotate a VCF with other VCFs/BEDs/tabixed files