1172 Open source projects that are alternatives of or similar to Arcs

🔬 Assemble large genomes using short reads

A package for designing compact and comprehensive capture probe sets.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Official code repository for GATK versions 4 and up

A genome browser that shows long reads and complex variants better

Java utilities for Bioinformatics

GenomeTools genome analysis system.

An analysis and visualization platform for 'omics data

Data intensive science for everyone.

NGLess: NGS with less work

Next generation sequencing reads de novo assembler.

A collection of scripts and notes related to genomics and bioinformatics

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

compacted de Bruijn graph construction in low memory

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Curated (meta)list of resources for Biology.

UGENE is free open-source cross-platform bioinformatics software

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

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🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

Bio4j abstract model and general entry point to the project

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

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Plant image analysis using OpenCV

Signal-level algorithms for MinION data

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A repository for setting up a RNAseq workflow

Scientific measurement library for instruments, experiments, and live-plotting

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.

Provides a new artist for matplotlib to display a scale bar, aka micron bar.

Graph your Z-Wave mesh automatically from within Home Assistant.

Dgraph schema manager, with mutate and query helpers

PENMAN notation (e.g. AMR) in Python

Model and predict short DNA sequence features with neural networks

A computer algebra system written in pure Python

Simple and lightweight vue chart component without using chart library dependencies

Calendar graph like github using jsx support SVG, Canvas and SSR

🏗 forkable Ethereum dev stack focused on fast product iterations

Yet Another Chimeric Read Detector

Neo4j Movies Example application with SparkJava backend using the neo4j-java-driver

Parser and database to index the terpene profile of different strains of Cannabis from online databases

A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

representation learning on attributed graphs

Stardog JavaScript Framework for node.js and the browser

Python Implementation for Random Walk with Restart (RWR)

A graph database written in rust

Unsupervised Attributed Multiplex Network Embedding (AAAI 2020)

Cacti ™

An experimental HTML5 & WebGL video composition and rendering API.

Examples for the usage of LaTeX

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

Scaffold out a Gulp plugin boilerplate

Real-time position tracker for behavioral research

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Dagger dependency graph generator for Android Developers