270 Open source projects that are alternatives of or similar to asap

BACTpipe: An assembly and annotation pipeline for bacterial genomics

Collection of scripts for bacterial genomics

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

Reduce repetitive inheritance works in OOP world using @MethodScope.

Annotation-based multifunctional command handler framework for JDA & Javacord.

Social Media Mining Toolkit (SMMT) main repository

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Python library for automatic analysis of Ancient Greek hexameter. The algorithm uses linguistic rules and finite-state technology.

An automated RNA-seq pipeline using Nextflow

RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.

A toolkit project to enable you to build annotation processors more easily

Next Generation of Apex Development

Skip your PhpSpec examples through annotations

One-click image sorting/labelling script

easy storage Object on SharedPreferences

myVCF: a web-based platform for target and exome mutations data management

The official tool for transforming doccano format into common dataset formats.

Utilities for analyzing next generation sequencing data.

OpenCV based DNN Object Detection Library for Openframeworks

Exome/Capture/RNASeq Pipeline Implementation using snakemake

🐳 Bio-dockers: dockerized bioinformatic tools

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

No description or website provided.

Cornell AMR Semantic Parser (Artzi et al., EMNLP 2015)

No description or website provided.

AMReX-based structured wind solver

Dart and Flutter sealed class generator and annotations, with match methods and other utilities. There is also super_enum compatible API.

A lightweight tool for labeling 3D bounding boxes in point clouds.

My bioinfo toolbox

lightweight typescript retry decorator with 0 dependency.

Wireless MeterLogger for Kamstrup heat energy meters and pulse based meters

Faster BWA-MEM2 using learned-index

Generate documentation from annotated Ansible Playbooks and Roles

amr-nb decoder for foobar2000

Tools, documentation and resources for creating front-end pages and apps in Hypothesis

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

A library for manipulating bioinformatics sequencing formats in Apache Spark

No description or website provided.

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

a neovim comment and annotation plugin using coroutine

Epub Reader, focused on annotation.

Python modules and scripts for working with Concrete, a data serialization format for NLP

A Rails application for biological ontologies

a data mediator framework bind callbacks for any property

Create 3D labelled bounding boxes in RViz

Multi-sample somatic variant caller

Question Answering annotation platform - Plateforme d'annotation

Automatic code generation for the SharedPreferences operation.

This is the ensembldb development repository.

Ultrafast sequence typing and gene detection from NGS raw reads

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to cite ECO. Visit our website for more project info.

An easy-to-use way for running Galaxy workflows.

💾 📃 "Reads to report" for public health and clinical microbiology

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework

Multiphysics Finite Element package built on libMesh

Identify phage regions in bacterial genomes for masking purposes