546 Open source projects that are alternatives of or similar to Awesome Cheminformatics

Software to look for interrelationships between constants and find formulas for number sequences

Bayesian genotyper for structural variants

Example client programs for Saphetor's VarSome annotation API

A deep learning framework for molecular docking

Real-time species-typing visualisation for nanopore data.

Biological sequences for the julia language

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Toolkit for processing sequences in FASTA/Q formats

A fast whole-genome aligner based on de Bruijn graphs

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

Core BioPerl 1.x code

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

Sample search by metadata and features

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

WebLogo 3: Sequence Logos redrawn

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

Protein Graph Library

The Microbiome Interpretable Temporal Rule Engine

The START App: R Shiny Transcriptome Analysis Resource Tool

A simplified pipeline for ctDNA sequencing data analysis

Bayesian haplotype-based mutation calling

Phylogenetic trees in Julia

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

A curated list of resources for learning bioinformatics.

A collection of scripts and notes related to genomics and bioinformatics

Aggregate results from bioinformatics analyses across many samples into a single report.

micca - MICrobial Community Analysis

Global Biotic Interactions provides access to existing species interaction datasets

Olympus: a benchmarking framework for noisy optimization and experiment planning

A comprehensive library for computational molecular biology

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

compacted de Bruijn graph construction in low memory

Python for Bioinformatics

No description or website provided.

🌈Scaffold genome sequence assemblies using linked read sequencing data

Curated list of bioinformatics formats and publications

An application based on Python and designed as a solution for geology related daily work.

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Genome inference from a population reference graph

No description or website provided.

Examples of using deep learning in Bioinformatics

📊 Identify cell types and pathways affected by genetic risk loci.

LAMBDA – the Local Aligner for Massive Biological DatA

A standalone rewrite of FrogCraft, an IC2 Addon with theme of chemical industry, starting from scratch.

Fast multi-line FASTA/Q reader in several programming languages

Predict plasmids from uncorrected long read data

Model and predict short DNA sequence features with neural networks

Ten Quick Tips for Deep Learning in Biology

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Scalable genomic data analysis.

pymzML - an interface between Python and mzML Mass spectrometry Files

A plotly.js React component from Plotly 📈

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Python and C++ code for reading and writing genomics data.

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Bioconductor cheat sheet

Code for the paper: Benhenda, M. 2017. ChemGAN challenge for drug discovery: can AI reproduce natural chemical diversity? arXiv preprint arXiv:1708.08227.

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang