Dbda PythonDoing Bayesian Data Analysis, 2nd Edition (Kruschke, 2015): Python/PyMC3 code
Stars: ✭ 502 (+672.31%)
PyvarinfPython package facilitating the use of Bayesian Deep Learning methods with Variational Inference for PyTorch
Stars: ✭ 317 (+387.69%)
Rhat essRank-normalization, folding, and localization: An improved R-hat for assessing convergence of MCMC
Stars: ✭ 19 (-70.77%)
EmbracingUncertaintyMaterial for AMLD 2020 workshop "Bayesian Inference: embracing uncertainty"
Stars: ✭ 23 (-64.62%)
Fusiondirect.jl(No maintenance) Detect gene fusion directly from raw fastq files
Stars: ✭ 23 (-64.62%)
Bda r demosBayesian Data Analysis demos for R
Stars: ✭ 409 (+529.23%)
AutopplC++ template library for probabilistic programming
Stars: ✭ 34 (-47.69%)
platonIdentification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Stars: ✭ 52 (-20%)
NgsdistEstimation of pairwise distances under a probabilistic framework
Stars: ✭ 6 (-90.77%)
NotesResources to learn more about Machine Learning and Artificial Intelligence
Stars: ✭ 766 (+1078.46%)
ZigZagBoomerang.jlSleek implementations of the ZigZag, Boomerang and other assorted piecewise deterministic Markov processes for Markov Chain Monte Carlo including Sticky PDMPs for variable selection
Stars: ✭ 58 (-10.77%)
ResourcesPyMC3 educational resources
Stars: ✭ 930 (+1330.77%)
Dsge.jlSolve and estimate Dynamic Stochastic General Equilibrium models (including the New York Fed DSGE)
Stars: ✭ 625 (+861.54%)
MigmapHTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Stars: ✭ 38 (-41.54%)
Scikit StanA high-level Bayesian analysis API written in Python
Stars: ✭ 22 (-66.15%)
Dnest4Diffusive Nested Sampling
Stars: ✭ 49 (-24.62%)
Rstanarmrstanarm R package for Bayesian applied regression modeling
Stars: ✭ 285 (+338.46%)
ManormA robust model for quantitative comparison of ChIP-Seq data sets.
Stars: ✭ 16 (-75.38%)
nessainessai: Nested Sampling with Artificial Intelligence
Stars: ✭ 18 (-72.31%)
Ipynotebook machinelearningThis contains a number of IP[y]: Notebooks that hopefully give a light to areas of bayesian machine learning.
Stars: ✭ 27 (-58.46%)
viabelEfficient, lightweight variational inference and approximation bounds
Stars: ✭ 27 (-58.46%)
Brmsbrms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
Stars: ✭ 825 (+1169.23%)
Pytorch BayesiancnnBayesian Convolutional Neural Network with Variational Inference based on Bayes by Backprop in PyTorch.
Stars: ✭ 779 (+1098.46%)
peppyProject metadata manager for PEPs in Python
Stars: ✭ 29 (-55.38%)
PyroDeep universal probabilistic programming with Python and PyTorch
Stars: ✭ 7,224 (+11013.85%)
RstanRStan, the R interface to Stan
Stars: ✭ 760 (+1069.23%)
Pymc3Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Aesara
Stars: ✭ 6,214 (+9460%)
NumpyroProbabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
Stars: ✭ 929 (+1329.23%)
HtslibC library for high-throughput sequencing data formats
Stars: ✭ 529 (+713.85%)
BnlearnPython package for learning the graphical structure of Bayesian networks, parameter learning, inference and sampling methods.
Stars: ✭ 51 (-21.54%)
LooperA resource list for causality in statistics, data science and physics
Stars: ✭ 23 (-64.62%)
DeeptoolsTools to process and analyze deep sequencing data.
Stars: ✭ 448 (+589.23%)
DblinkDistributed Bayesian Entity Resolution in Apache Spark
Stars: ✭ 38 (-41.54%)
Vae cfVariational autoencoders for collaborative filtering
Stars: ✭ 386 (+493.85%)
PycuriousPython package for computing the Curie depth from the magnetic anomaly
Stars: ✭ 22 (-66.15%)
BayaderaHigh-performance Bayesian Data Analysis on the GPU in Clojure
Stars: ✭ 342 (+426.15%)
AorunDeep Learning over PyTorch
Stars: ✭ 61 (-6.15%)
JvarkitJava utilities for Bioinformatics
Stars: ✭ 313 (+381.54%)
Bayesian Neural NetworksPytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more
Stars: ✭ 900 (+1284.62%)
nwaynway -- Bayesian cross-matching of astronomical catalogues
Stars: ✭ 39 (-40%)
FastpAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Stars: ✭ 966 (+1386.15%)
mitreThe Microbiome Interpretable Temporal Rule Engine
Stars: ✭ 37 (-43.08%)
Ggdistributeggplot2 extension for plotting distributions
Stars: ✭ 16 (-75.38%)
ctdna-pipelineA simplified pipeline for ctDNA sequencing data analysis
Stars: ✭ 29 (-55.38%)
CausalnexA Python library that helps data scientists to infer causation rather than observing correlation.
Stars: ✭ 1,036 (+1493.85%)
DNAscanDNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.
Stars: ✭ 36 (-44.62%)
BayesflareA python module to detect stellar flares using Bayesian model comparison
Stars: ✭ 6 (-90.77%)
gencoreGenerate duplex/single consensus reads to reduce sequencing noises and remove duplications
Stars: ✭ 91 (+40%)
NgsfEstimation of per-individual inbreeding coefficients under a probabilistic framework
Stars: ✭ 10 (-84.62%)
GalaxyData intensive science for everyone.
Stars: ✭ 812 (+1149.23%)
Abra2ABRA2
Stars: ✭ 65 (+0%)
BlackjaxBlackJAX is a sampling library designed for ease of use, speed and modularity.
Stars: ✭ 56 (-13.85%)
GatkOfficial code repository for GATK versions 4 and up
Stars: ✭ 1,002 (+1441.54%)
TifTransposon Insertion Finder - Detection of new insertions in NGS data
Stars: ✭ 9 (-86.15%)
Bda py demosBayesian Data Analysis demos for Python
Stars: ✭ 781 (+1101.54%)