696 Open source projects that are alternatives of or similar to Bioconvert

Tools for working with genomic and high throughput sequencing data.

NGLess: NGS with less work

C library for high-throughput sequencing data formats

A package for designing compact and comprehensive capture probe sets.

Java utilities for Bioinformatics

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

UGENE is free open-source cross-platform bioinformatics software

Method to optimally select samples for validation and resequencing

A simplified pipeline for ctDNA sequencing data analysis

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Data intensive science for everyone.

🔬 BEDOPS: high-performance genomic feature operations

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

Project metadata manager for PEPs in Python

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

R package for analyzing single-cell RNA-seq data

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

A robust model for quantitative comparison of ChIP-Seq data sets.

(No maintenance) Detect gene fusion directly from raw fastq files

Yet Another Chimeric Read Detector

Tools to process and analyze deep sequencing data.

Official code repository for GATK versions 4 and up

A robust and fast clustering method for amplicon-based studies

MOLGENIS - for scientific data: management, exploration, integration and analysis.

Sequana: a set of Snakemake NGS pipelines

🔎Sniffing and parsing mysql,redis,http,mongodb etc protocol. 抓包截取项目中的数据库请求并解析成相应的语句。

Passively scan for Bluetooth Low Energy devices and attempt to fingerprint them

A more accurate representation of jupyter notebooks when converting to pdfs.

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

A curated list of awesome Bioinformatics libraries and software.

Network Analysis Tool

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

Post-analysis of immune repertoire sequencing data

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

DDOS Archive by RootSec (Scanners, BotNets (Mirai and QBot Premium & Normal and more), Exploits, Methods, Sniffers)

Demonstrating best practices for bioinformatics command line tools

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

Bioinformatics Workbook repository

Antimicrobial Resistance Identification By Assembly

Structural variant toolkit for VCFs

Conda recipes for the bioconda channel.

A tool to convert AWS EC2 instances back and forth between On-Demand and Spot billing models.

✏️ A versatile DNA sequence optimizer

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

SquiggleKit: A toolkit for manipulating nanopore signal data

A DSL for data-driven computational pipelines

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

Python module for average nucleotide identity analyses

A Practical and Efficient NCBI Taxonomy Toolkit

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

GCP Essentials for Bioinformatics Researchers

GO enrichment with python -- pandas meets networkx