326 Open source projects that are alternatives of or similar to bioinf-commons

A DNA Sequence Alignment/Map (SAM) library for Clojure

Frequently used commands in bioinformatics

Syntax highlighting for computational biology

Sync paired-end FASTA/Q files and keep singleton reads

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

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Fast and accurate sequence demultiplexing

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

Postgres extension to sample statements or transactions to logs

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Tired of boring Android progress views? This one is amazing!

Markov Chains and Hidden Markov Models in Python

SADDLE: Scala Data Library

Software for prediction of plasmid sequences in metagenomic assemblies

🚼->🚶->👻

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

CWL tools and workflows for GGR

Citar HMM part-of-speech tagger

Poisson disk sampling in arbitrary dimensions

this script will allow you to configure a progress bar with a timer with other options

Efficient handling of FASTQ files from Python

A scalable general purpose micro-framework for defining dataflows. You can use it to create dataframes, numpy matrices, python objects, ML models, etc.

自定义ProdressView-进度条动画

利用 github api 实现的一个存储图片/附件的 wordpress 插件

tidy processing of biological sequences in R

Exome/Capture/RNASeq Pipeline Implementation using snakemake

R package: Misc. Functions for Processing and Sample Selection of Spectroscopic Data

Apache Arrow DataFusion SQL Query Engine

Python implementation of Hidden Markov Model, with demo of Chinese Part-of-Speech tagging

MAnorm2 for Normalizing and Comparing ChIP-seq Samples

Spark VCF data source implementation for Dataframes

Utility class to manipulate dataset from CSV file

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Detecting Frauds in Online Transactions using Anamoly Detection Techniques Such as Over Sampling and Under-Sampling as the ratio of Frauds is less than 0.00005 thus, simply applying Classification Algorithm may result in Overfitting

Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

nest-rabbit-worker is a TaskQueue based upon RabbitMQ for NestJS

Progress Bar displayed in Notion like tqdm for Python

🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

Python-based UCSC genome browser snapshot-taker and gallery-maker

Command line utility for manipulating Illumina-generated FastQ files.

Hierarchical Bayesian estimation and hypothesis testing for delay discounting tasks

libfmp - Python package for teaching and learning Fundamentals of Music Processing (FMP)

Structured data processing in Kotlin

Utilities for analyzing next generation sequencing data.

machine learning

Woodwork is a Python library that provides robust methods for managing and communicating data typing information.

Go data analysis / manipulation library built on top of Apache Arrow

Clean APIs for data cleaning. Python implementation of R package Janitor

💾 📃 "Reads to report" for public health and clinical microbiology

Enabling easy statistical significance testing for deep neural networks.

🐳 Arc circular animation progress bar drawn by canvas, you can used in the react component, or no dependence.

[DEPRECATED] Use @angular/common/http instead

Sampling nuclear data and uncertainty

Hidden Markov Models for Julia.

heidi : tidy data in Haskell

Multi-dimensional data arrays with labeled dimensions

AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project

In-memory Graph Database and Knowledge Graph with Natural Language Interface, compatible with Pandas

Node.js module to create and manage multiple spinners in command-line interface programs