FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

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javascript Jupyter Notebook python visualization bioinformatics sequencing liftover dna protein alignment fasta fluent ddv msa fasta-sequences bioinformatics-tool chain-alignment fluentdna

freqgen

🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

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python javascript Vue HTML genetic-algorithm fasta kmer codon-usage

angsd-wrapper

Utilities for analyzing next generation sequencing data.

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shell r visualization wrapper gui bam-files ngs next-generation-sequencing software fasta sfs user-friendly population-genetics admixture genotype-likelihoods ngs-analysis thetas inbreeding-coefficient

tidysq

tidy processing of biological sequences in R

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C++r c bioinformatics s3 tidyverse rstats bioconductor fasta tidy sequences biological-sequences tibble vctrs

hts-python

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

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python c shell bioinformatics genomics sam fasta bam htslib

PlasFlow

Software for prediction of plasmid sequences in metagenomic assemblies

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python r shell perl tensorflow prediction classification fasta plasmid metagenomes contigs metagenome plasmid-sequences metagenome-assembly plasmids plasflow

pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

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perl python shell bioinformatics pipeline genomics docker-image polymorphic closing fasta scaffolding assembled-contigs genome-assembly paired-end contigs heterozygous mate-pairs

Pairfq

Sync paired-end FASTA/Q files and keep singleton reads

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perl fasta fastq paired-end

biomisc R

command line bioinformatic scripts written in R

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r bioinformatics statistics fasta differential-expression

bioSyntax-archive

Syntax highlighting for computational biology

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Vim Script shell awk syntax-highlighting vim less bioinformatics sublime pdb computational-biology sam gedit vcf fasta bam

cljam

A DNA Sequence Alignment/Map (SAM) library for Clojure

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clojure bioinformatics genomics sam vcf fasta bigwig bed bam fastq bcf wig gff 2bit

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