651 Open source projects that are alternatives of or similar to Biojava

This library tackles the construction and efficient execution of computational chemistry workflows

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No description or website provided.

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Python library to handle Gene Ontology (GO) terms

Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝

GNparser normalises scientific names and extracts their semantic elements.

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Curated list of bioinformatics formats and publications

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𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

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Open-source bioinformatics components for Dash

Genome-wide imputation pipeline

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MOLeculAR structure annoTator

No description or website provided.

Python package and CLI for whole-genome duplication related analyses

Ploidy agnostic phasing pipeline and algorithm

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Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format

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Utility to resolve SQL Server callstacks to their correct symbolic form using just PDBs and without a dump file

Leftry - A left-recursion enabled recursive-descent parser combinator library for Lua.

A parser library for Pony.

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A tool for fast and accurate summarizing of variant calling format (VCF) files

Complex structural variant detection from WGS data

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).

Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests

A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.

Debug Python code within a Docker container remotely from your terminal using pudb

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

Syntax highlighting for computational biology

API for linked biological knowledge

A Java parser combinator library written with an unmatched feature set.

Fast genome-wide functional annotation through orthology assignment

Tools for working with SAM/BAM data

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Inference of switch-like differential expression along single-cell trajectories

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A library to build and execute typed scientific workflows

The Ensembl Compara Perl API and SQL schema

exploratory and interactive microbiome analyses based on heatmaps

Remotely and collaboratively debug your Python application via an IRC channel.