970 Open source projects that are alternatives of or similar to Bio.jl

A python wrapper for the benchling api

Multilocus sequence typing by blast using the schemes from PubMLST

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

Preprocess CSS with Styl

The new and improved 2018 version of the EMBL Python BioImage Analysis Tutorial. Now finally in python 3!

🐳 Bio-dockers: dockerized bioinformatic tools

Mapping-Assisted Targeted-Assembly for Metagenomics

Cellular Automata Simulator

An unofficial NordVPN client [DEPRECATED]

Curated list of bioinformatics formats and publications

Read DNA sequences from colourful Microsoft Word documents

Streamlining SLAM-seq analysis with ultra-high sensitivity

Identify phage regions in bacterial genomes for masking purposes

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

DEPRECATED - Go CLI which can be used to update the default branch name on any GitHub repo

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Spark VCF data source implementation for Dataframes

[DEPRECATED] Command-line toolbelt for PWA developers

WebAssembly modules for genomics

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

Complex structural variant detection from WGS data

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Inference of switch-like differential expression along single-cell trajectories

Library support to use react-i18next with the Phrase In-Context Editor - DEPRECATED

Butter Cloudiness by Example

View biological networks via Cytoscape.js and sbgn-ml

ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

Bioconductor package for management of multi-assay data

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

exploratory and interactive microbiome analyses based on heatmaps

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

Improving genome bins through the combination of different binning programs

Big Compute Learning Labs

API for linked biological knowledge

🚨[DEPRECATED] Lazybones templates for Adobe Experience Manager🚨

Liquid is a framework to speed up the development of microservices

Improve the quality of a denovo assembly by scaffolding and gap filling

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Explore rearrangements and copy-number amplifications in a cancer genome

Find causal cell-types underlying complex trait genetics

Datastructures and algorithms for working with genetic variation

RethinkDB Scala Driver

Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

This library tackles the construction and efficient execution of computational chemistry workflows

[DEPRECATED] A Xiaomi Mi ac partner plugin for Homebridge.

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Explore gnomAD datasets on the web

Home of the Genomic Feature and Variation Ontology (GFVO)

Data Wrangling and Processing for Genomics

Preprocess CSS with Rework

DEPRECATED: This project has been replaced by documentation within Confluence regarding best practices for setting up a new Drupal 9 project.

The Microbiome Interpretable Temporal Rule Engine

Build and maintain multiple custom conda environments all in once place.

[deprecated] [Arduino (compatible)] Arduino c++ client library to connect to the AllThingsTalk platform

DEPRECATED The bookmarklet and extensions generate QRCode of the current URL for viewing on mobile devices (Google Chrome/Mozilla Firefox/Opera/Safari)

An R package for reproducible and automated ADMIXTOOLS analyses

DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.

📊 Codon usage tables in code-friendly format + Python bindings

PERF is an Exhaustive Repeat Finder

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search