676 Open source projects that are alternatives of or similar to Biopython

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Annotated data.

APBS - software for biomolecular electrostatics and solvation

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Comprehensive toolkit for generating various numerical features of protein sequences

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

Snakemake-based workflow for detecting structural variants in WGS data

Bioinformatics containers

Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data

Python library to handle Gene Ontology (GO) terms

structural variant calling and genotyping with existing tools, but, smoothly.

Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

A repository for setting up a RNAseq workflow

An efficient FASTQ manipulation suite

Randomly subsample sequencing reads to a specified coverage

Post-analysis of immune repertoire sequencing data

Plant image analysis using OpenCV

Package for fetching metadata and downloading data from SRA/ENA/GEO

课题组每周研讨会

Bioinformatics Workbook repository

A scikit-learn compatible library for graph kernels

React component for Cytoscape.js network visualisations

Open-source bioinformatics components for Dash

Script to automatically create and run IGV snapshot batchscripts

Bio4j abstract model and general entry point to the project

Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

A lightweight immune repertoire browser

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Predicting Future Influenza Virus Sequences with Machine Learning

Modular and universal bioinformatics

SquiggleKit: A toolkit for manipulating nanopore signal data

The Chemistry Development Kit

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

🔬 Assemble large genomes using short reads

code for reading and processing Allen Institute for Brain Science data

Tools for working with genomic and high throughput sequencing data.

Benchmarking programming languages/implementations for common tasks in Bioinformatics

UNCURL is a tool for single cell RNA-seq data analysis.

Single-Cell Analysis in Python. Scales to >1M cells.

Python module for average nucleotide identity analyses

A full spaCy pipeline and models for scientific/biomedical documents.

Syntax highlighting for computational biology

Estimate metagenomic coverage and sequence diversity

🐣 locally query the ncbi taxonomy

Protein Graph Library

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

Javascript full-stack framework for Big Data visualisation and analysis

Pegasus Workflow Management System - Automate, recover, and debug scientific computations.

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

An open-source toolkit for large-scale genomic analysis

A Practical and Efficient NCBI Taxonomy Toolkit

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

A wrapper for the EnsEMBL REST API

variant expressions, annotation, and filtering for great good.

Fast & accurate alignment of barcoded short-reads

Fast Reference-Guided Scaffolding of Genome Assembly Contigs. RagTag, the successor to RaGOO, is now available here: https://github.com/malonge/RagTag

SortMeRNA: next-generation sequence filtering and alignment tool

(No maintenance) Detect gene fusion directly from raw fastq files