446 Open source projects that are alternatives of or similar to Biosequences.jl

WebLogo 3: Sequence Logos redrawn

RNAcentral website source code

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

Structural variation caller using third generation sequencing

Data intensive science for everyone.

Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.

The Microbiome Interpretable Temporal Rule Engine

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Core BioPerl 1.x code

A simplified pipeline for ctDNA sequencing data analysis

Strelka2 germline and somatic small variant caller

Aggregate results from bioinformatics analyses across many samples into a single report.

Quickly search, compare, and analyze genomic and metagenomic data sets.

Phylogenetic trees in Julia

Examples of using deep learning in Bioinformatics

Exact Tandem Repeat Finder (not a TRF replacement)

Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

🔬 Assemble large genomes using short reads

A plotly.js React component from Plotly 📈

React component for Cytoscape.js network visualisations

micca - MICrobial Community Analysis

A curated list of resources for learning bioinformatics.

Model and predict short DNA sequence features with neural networks

Proof-of-concept seq-to-graph mapper and graph generator

BACNET is a Java based platform to develop website for multi-omics analysis

Python and C++ code for reading and writing genomics data.

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Modular and universal bioinformatics

Read and write FASTQ and FASTA efficiently from Python

Python package for graph neural networks in chemistry and biology

A PyTorch and TorchDrug based deep learning library for drug pair scoring.

RAxML Next Generation: faster, easier-to-use and more flexible

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

A genome browser that shows long reads and complex variants better

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

Deep learning infrastructure for bioinformatics

Build and maintain multiple custom conda environments all in once place.

Reads simulator

Earl Grey: A fully automated TE curation and annotation pipeline

Rapid large-scale prokaryote pan genome analysis

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

A fast 23andMe genome text file parser, now superseded by arv

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Fast hash function for DNA sequences

Annotated data.

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

API for linked biological knowledge

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Project Home repo for Central Dockerfile and Project-wide issues

An interactive web tool for quality control of DNA sequencing data

The START App: R Shiny Transcriptome Analysis Resource Tool

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Lightweight Iterative Gene set Enrichment in R

Efficient variant-call data storage and retrieval library using the TileDB storage library.