442 Open source projects that are alternatives of or similar to BridgeDb

Remote protein homology detection suite.

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

A Dart static code generator that produces matchers and builders from route uri patterns.

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

RFC 3986 compliant url parsing library with PSR-7 Uri component

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

A faster lmm for GWAS. Supports GPU backend.

A powerful open source data warehouse system

Haplotype VCF comparison tools

cython + htslib == fast VCF and BCF processing

Protein Graph Library

DEPRECATED - Migrated to https://github.com/mozilla/fxa

🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

An ultrafast memory-efficient short read aligner

URL normalization for Python

🔬 BEDOPS: high-performance genomic feature operations

R mased batch sequence downloader, with primer development and in silico evaluation capabilities

code for reading and processing Allen Institute for Brain Science data

Fast and simple URL parsing for Java, with UTF-8 and path resolving support

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A Tool to Redirect News, Search, Widgets, Weather and More to Your Default Browser

GenomeTools genome analysis system.

A curated list of Cheminformatics libraries and software.

Core BioPerl 1.x code

Deep learning infrastructure for bioinformatics

Rust implementation of CryptoURI: URN-like namespace for cryptographic objects with Bech32-based encoding

Strelka2 germline and somatic small variant caller

Computational Analysis of Novel Drug Opportunities

Quickly search, compare, and analyze genomic and metagenomic data sets.

A type to represent, query, and manipulate a Uniform Resource Identifier.

Examples of using deep learning in Bioinformatics

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.

Support for Competitive Coding badges to add in Github readme or portfolio websites.

🔬 Assemble large genomes using short reads

The Ensembl Compara Perl API and SQL schema

React component for Cytoscape.js network visualisations

The ultimate Sublime Text plugin for opening URIs (URLs) in your file.

A curated list of resources for learning bioinformatics.

GNparser normalises scientific names and extracts their semantic elements.

Proof-of-concept seq-to-graph mapper and graph generator

A web interface for FreeRADIUS with a MySQL backend. Fast and painless configuration with Docker.

Intuitive local web frontend for the BLAST bioinformatics tool

A simple command-line tool to download data from Joint Genome Institute databases

Python package for graph neural networks in chemistry and biology

Structural variation caller using third generation sequencing

RAxML Next Generation: faster, easier-to-use and more flexible

Toolkit for preparing genomes for submission to NCBI

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications in Julia. No JavaScript required.

A genome browser that shows long reads and complex variants better

a parser and a builder to work with URI query string the right way in PHP

JavaScript VisualizationTools

A permissively licensed library designed to replace Illumina's Experiment Manager

Genomics using open source tools, running on GCP or AWS

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

A lightweight and simple Kotlin library for deep link handling on Android 🔗.

Official git repository for Biopython (originally converted from CVS)