442 Open source projects that are alternatives of or similar to BridgeDb

An interactive web tool for quality control of DNA sequencing data

No description or website provided.

Examples of using deep learning in Bioinformatics

Curated list of bioinformatics formats and publications

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

No description or website provided.

The START App: R Shiny Transcriptome Analysis Resource Tool

📊 Identify cell types and pathways affected by genetic risk loci.

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Project metadata manager for PEPs in Python

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Next generation sequencing reads de novo assembler.

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

Global Biotic Interactions provides access to existing species interaction datasets

transparently build CWL and Galaxy XML tool definitions for any script that uses argparse

Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

Characterization of Germline variants

Introduction to the Unix Shell for biologists

R package for analyzing single-cell RNA-seq data

Mapping-Assisted Targeted-Assembly for Metagenomics

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Support for Competitive Coding badges to add in Github readme or portfolio websites.

exploratory and interactive microbiome analyses based on heatmaps

Parser and database to index the terpene profile of different strains of Cannabis from online databases

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

Package for fetching metadata and downloading data from SRA/ENA/GEO

A curated list of awesome bioinformatics software.

A tutorial on methods of 16S analysis with QIIME 1

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

🔬 Assemble large genomes using short reads

Read DNA sequences from colourful Microsoft Word documents

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

Fast alignment and preprocessing of chromatin profiles

parallel fastq-dump wrapper

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Python Programming for Biologists

A computational library for learning and evaluating biological knowledge graph embeddings

The Ensembl Compara Perl API and SQL schema

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

Emperor a tool for the analysis and visualization of large microbial ecology datasets

Provide R access to the NCI Genomic Data Commons portal.

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Useful bioinformatic scripts

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

My own tools code for NGS data analysis (Next Generation Sequencing)

React component for Cytoscape.js network visualisations

Lightweight Iterative Gene set Enrichment in R

A permissively licensed library designed to replace Illumina's Experiment Manager

Genomics using open source tools, running on GCP or AWS

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

A lightweight and simple Kotlin library for deep link handling on Android 🔗.

Official git repository for Biopython (originally converted from CVS)

Ten Quick Tips for Deep Learning in Biology

Demonstrating best practices for bioinformatics command line tools

Plant image analysis using OpenCV