245 Open source projects that are alternatives of or similar to BuddySuite

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Protein structure comparison tools such as SSAP and SNAP

Official git repository for Biopython (originally converted from CVS)

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Fast and flexible ORF finder

3d engine implementation in DNA code!

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Binomica Public Repository for Biological Parts

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

DOM Text Based Multiple Sequence Alignment Library

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

waka waka

booster.c3bi.pasteur.fr

Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.

Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".

MTCNN implement by tensorflow. Easy to training and testing.

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

📚 🔬 PIA - Protein Inference Algorithms

Datastructures and algorithms for working with genetic variation

Implementing semantically rich NeXML I/O in R

Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

Helpful components for aligning and keeping virtual objects aligned with the physical world.

♥ Essential Functions for DNA Manipulation

Neural Networks for Protein Sequence Alignment

plant collections manager (desktop version)

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

Research on polio / protein folding.

A homology-based, computationally lightweight pipeline for discovering genes in the absence of an assembly

No description or website provided.

View biological networks via Cytoscape.js and sbgn-ml

Whole Exome/Whole Genome Sequencing alignment pipeline

Nightlight: Astronomic Image Processing

ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

Predict AMPs in (meta)genomes and peptides

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

Bioclipse2 Core.

Ultrafast sequence typing and gene detection from NGS raw reads

tools for reading, writing, merging, and remapping SNPs

Blender plugin to process biological data and molecular work.

Nanopore demultiplexing, QC and alignment pipeline

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

Needleman-Wunsch and Smith-Waterman algorithms in python

Ultrafast Sample Placement on Existing Trees

A web application to visualize and edit pathway models

Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

Deep neural network for the alignment of GC-MS peaks

Flexible Algorithms for Image Registration

A fast 23andMe DNA parser and inferrer for Python

Facial Landmark Detection based on PyTorch

Sequence alignment tools

Biological Sequence Substitution Models for Julia

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

Differentiable molecular simulation of proteins with a coarse-grained potential

The Modular Aligner and The Modular SV Caller

Displayed width of UTF-8 strings in Modern C++

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

Aligns short reads using dynamic seed size with strobemers