281 Open source projects that are alternatives of or similar to cath-tools

Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

VSCode Extension for interactively visualising protein structure data in the editor

A suite of tools to explore protein structures with Protein Blocks 🐍

Protein cavity identification and automatic subpocket decomposition

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

DOM Text Based Multiple Sequence Alignment Library

A dependency-free cross-platform swiss army knife for PDB files.

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

Aligns short reads using dynamic seed size with strobemers

Recommendations for sufficiently clean architecture for local database storage and persistent storage.

Just another tool to download specify Symbol (.pdb) files

Binomica Public Repository for Biological Parts

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Converts between Windows PDB and Portable PDB formats.

Research on polio / protein folding.

Laravel 5.4 & Angular 4.3.4

Nightlight: Astronomic Image Processing

JSBerry is open source modular simple architecture for building Node.js applications.

odoo alipay module

ProtVec can be used in protein interaction predictions, structure prediction, and protein data visualization.

Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.

Datastructures and algorithms for working with genetic variation

Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

Predict AMPs in (meta)genomes and peptides

Helpful components for aligning and keeping virtual objects aligned with the physical world.

The Modular Aligner and The Modular SV Caller

Neural Networks for Protein Sequence Alignment

Cellular Automata Simulator

No description or website provided.

Fetch PDB symbols directly from Microsoft's symbol servers

Sequence alignment tools

Colorify - C# .Net Console Library with Text Format: colors, alignment and lot more [ Win+Mac+Linux ]

Blender plugin to process biological data and molecular work.

View biological networks via Cytoscape.js and sbgn-ml

Protein Secondary Structure predictor using Convolutional Neural Networks

MTCNN implement by tensorflow. Easy to training and testing.

📑Golang Is Good, Structure Is Bad

📚 🔬 PIA - Protein Inference Algorithms

A game of truly quantum chess, with interference, entanglement, etc.

Convert an array of objects into a persistent or temporary directory structure.

medical image visualization library and development toolkit

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

Whole Exome/Whole Genome Sequencing alignment pipeline

This repository contains Leetcode Challenge Submissions.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

NoPdb: Non-interactive Python Debugger

Application to assign secondary structure to proteins

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

Guided Conditional Wasserstein GAN for De Novo Protein Design

plant collections manager (desktop version)

Version 3 of Chem4Word - A Chemistry Add-In for Microsoft Word

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

Nanopore demultiplexing, QC and alignment pipeline

Needleman-Wunsch and Smith-Waterman algorithms in python

Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

No description or website provided.

A web application to visualize and edit pathway models

Deep neural network for the alignment of GC-MS peaks

Facial Landmark Detection based on PyTorch