159 Open source projects that are alternatives of or similar to CellExplorer

A Python-based module for creating flexible and robust spike sorting pipelines.

Curate, visualize, annotate, and share your behavioral ephys data using Python

Modules for processing extracellular electrophysiology data from Neuropixels probes

Elephant is the Electrophysiology Analysis Toolkit

Python-based module with spike sorter wrappers and a simple API for running them.

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

An R package for experimental psychologists

Graphical experiment builder for the social sciences

Connectome Workbench

Biologically-realistic recurrent convolutional neural networks

A list of schools and researchers in computational neuroscience

ERPLAB Toolbox is a free, open-source Matlab package for analyzing ERP data. It is tightly integrated with EEGLAB Toolbox, extending EEGLAB’s capabilities to provide robust, industrial-strength tools for ERP processing, visualization, and analysis. A graphical user interface makes it easy for beginners to learn, and Matlab scripting provides enormous power for intermediate and advanced users.

A multi-dimensional embedding algorithm

TAPAS - Translational Algorithms for Psychiatry-Advancing Science

Brain Modeling Toolkit

MNE-CPP: A Framework for Electrophysiology

Brain Imaging Analysis Kit

EPFL summaries & cheatsheets over 5 years (computer science, communication systems, data science and computational neuroscience).

A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse

A fullstack javascript app for capturing and visualizing OpenBCI EEG data

[This repository is archived, will be deprecated after the release of phy 2.0]

A Python interface for ABF files

cell detection in calcium imaging recordings

PyTorch Connectomics: segmentation toolbox for EM connectomics

Temporal Network Tools

CS198-96: Intro to Neurotechnology @ UC Berkeley

Blue Brain Python Optimisation Library

A motor unit based model of skeletal muscle and fatigue

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

a python based software for visualization of neuroanatomical and morphological data.

python implementations of Analyzing Neural Time Series Textbook

A publicly-editable collection of open computational neuroscience resources

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

Distributed, Versioned, Image-oriented Dataservice

Deep Learning with Tensor Flow for EEG MNE Epoch Objects

The PyTorch Implementation of Variable Optimizers/ Neural Variable Risk Minimization proposed in our Neural Computation paper: Artificial Neural Variability for Deep Learning: On overfitting, Noise Memorization, and Catastrophic Forgetting.

Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments

A multi-purpose GPU-accelerated open-source suite for brain data visualization

Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.

Visualizer for large-scale and interactive ray-tracing of neurons

Inner ear models for Python

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

Nengo interactive visualizer

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.

Parameterizing neural power spectra into periodic & aperiodic components.

Fast and scalable spike sorting in python

Mother of All BCI Benchmarks

Real-time position tracker for behavioral research

Fast spike sorting with drift correction for up to a thousand channels

For running psychology and neuroscience experiments

🕝 Time-warped principal components analysis (twPCA)

The Tensorflow code and a DeepMind Lab wrapper for my article "Meta-Reinforcement Learning" on FloydHub.

EntroPy: complexity of time-series in Python (DEPRECATED)

Preparatory Materials, Self-guided Learning, and Project Management for Neuromatch Academy activities

ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.

Generate custom Docker and Singularity images, and minimize existing containers

NEURON Simulator

Automated mouse atlas propagation

A curated list of awesome neuroscience libraries, software and any content related to the domain.