148 Open source projects that are alternatives of or similar to chise.js

A web application to visualize and edit pathway models

PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

The consensus GEM for Saccharomyces cerevisiae

GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF

View biological networks via Cytoscape.js and sbgn-ml

Biological sequences for the julia language

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

The main repository for the development of the evolution game Thrive.

🐍 Web page that visualizes the reference relation between PEPs (Python Enhancement Proposals).

A taxonomic toolbelt for R

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

multigraph: Plot and Manipulate Multigraphs in R

Global Biotic Interactions provides access to existing species interaction datasets

Beautiful graph drawing

A list of web-based interactive biological data visualizations.

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Scripts to download genomes from the NCBI FTP servers

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

A modern genome browser built with JavaScript and HTML5.

A powerful open source data warehouse system

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Netvisix visualizes the network packet flow between hosts

Ten Quick Tips for Deep Learning in Biology

World Register of Marine Species R client

A Python Library for Conway's Game of Life

Data collection, equipment control, and imaging engine for environmental IoT applications. Runs on RPi/ARM and interfaces with Arduino/ATmega minions over serial.

Race and ethnicity Imputation from Disease history with Deep LEarning

CellMLToolkit.jl is a Julia library that connects CellML models to the Scientific Julia ecosystem.

Project Home repo for Central Dockerfile and Project-wide issues

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

Python Programming for Biologists

Blender plugin to process biological data and molecular work.

Brainfarts are caused by the rupturing of the cerebral sphincter.

Discover and visualize layer-2 and layer-3 network topology

A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images

📈R package for analyzing biological growth

A simulator for sketching mesh network routing strategies

3d engine implementation in DNA code!

Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

🔬A library of JavaScript components to represent biological data

Software for writing protocols and running them on the Opentrons OT-2

Java utilities for Bioinformatics

RNAcentral website source code

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

An interactive heatmap visualization built using D3.js

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

💹 SIMON is powerful, flexible, open-source and easy to use machine learning knowledge discovery platform 💻

DOM Text Based Multiple Sequence Alignment Library

Curated (meta)list of resources for Biology.

A python library for metabolic networks sampling and analysis

A PyTorch and TorchDrug based deep learning library for drug pair scoring.

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

VOSviewer Online is a tool for network visualization. It is a web-based version of VOSviewer, a popular tool for constructing and visualizing bibliometric networks.

📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology