753 Open source projects that are alternatives of or similar to Clusterflow

Robust and efficient workflows using a simple language agnostic approach

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Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

UGENE is free open-source cross-platform bioinformatics software

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

Robust, flexible and resource-efficient pipelines using Go and the commandline

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DEPRECIATED! Please use nf-core/tools instead

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Genome inference from a population reference graph

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Jenkins-Plugin to create a multi-branch-project from gitlab

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1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

Scrapy pipeline to store chunked items into Amazon S3 or Google Cloud Storage bucket.

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List of tools and resources related to the 10x Genomics GEMCode/Chromium system

integrated RNA-seq Analysis Pipeline

A fast whole-genome aligner based on de Bruijn graphs

Stetl, Streaming ETL, is a lightweight geospatial processing and ETL framework written in Python.

Structural variant toolkit for VCFs

LAMBDA – the Local Aligner for Massive Biological DatA

An interactive web tool for quality control of DNA sequencing data

Model and predict short DNA sequence features with neural networks

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

A library for generating an interactive SVG visualization of CWL workflows

MLBox is a powerful Automated Machine Learning python library.

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

Example workflows for the drake R package

Terraform Module for CI/CD with AWS Code Pipeline and Code Build for ECS https://cloudposse.com/

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

Protein-Level ASSembler (PLASS): sensitive and precise protein assembler

Making whole bacterial genome sequencing data analysis easy

Python Programming for Biologists

streaming pipeline with a mutable configuration

Support Vector Structural Variation Genotyper

GO enrichment with python -- pandas meets networkx

The START App: R Shiny Transcriptome Analysis Resource Tool

Emperor a tool for the analysis and visualization of large microbial ecology datasets

🌅 Dawn is a lightweight task management and build tool for front-end and nodejs.

Flexible genotype query among 30,000+ samples whole-genome

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Yet Another Chimeric Read Detector

A cross-platform tool for data pipelines.

Bayesian genotyper for structural variants

Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes