420 Open source projects that are alternatives of or similar to crazydoc

A Go package for engineering organisms.

Bystro genetic analysis (annotation, filtering, statistics)

🎯 Human transcription factor target genes.

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Version 5 of the CAFE phylogenetics software

(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

Provide R access to the NCI Genomic Data Commons portal.

Mulled - Automatized Containerized Software Repository

Golang for Bioinformatics

Open source Java library for computational proteomics

A curated list of resources for machine learning for small-molecule drug discovery

An open-access bioinformatics text

Feature extraction algorithm for genomic data

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

A python wrapper for the benchling api

3D printed sculpture of a DNA molecule, showing my own genome

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

API for linked biological knowledge

A Python platform for Structural Bioinformatics

A Kotlin DSL and library to create and plot RNA 2D structures

Useful bioinformatic scripts

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

🐛 How to use CENTIPEDE to determine if a transcription factor is bound.

Rapid determination of appropriate reference genomes.

WebGL Heatmap Viewer for Big Data and Bioinformatics

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

🍶Genome assembly with short sequence reads

A package for designing compact and comprehensive capture probe sets.

Per-base per-nucleotide depth analysis

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

Unsupervised domain adaptation method for relation extraction

Ploidy agnostic phasing pipeline and algorithm

Assembling the cause of phenotypes and genotypes from NGS data

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Fast and flexible ORF finder

Read and write FASTQ and FASTA efficiently from Python

Fast alignment and preprocessing of chromatin profiles

Fast hash function for DNA sequences

An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Stacked Denoising AutoEncoder based on TensorFlow

Simple pure Python SAM parser and objects for working with SAM records

Method to optimally select samples for validation and resequencing

Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources

Genomics data visualization in Python by using matplotlib.

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

GWAS summary statistics files QC tool

Streamlining SLAM-seq analysis with ultra-high sensitivity

Compute N50/NG50 and auN/auNG

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.

A computational library for learning and evaluating biological knowledge graph embeddings

My own tools code for NGS data analysis (Next Generation Sequencing)