license-lsGet a list of licenses used by a projects dependencies
Stars: ✭ 17 (-5.56%)
scadenDeep Learning based cell composition analysis with Scaden.
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TransPiTransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
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TCGAbiolinksGUITCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
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kanaSingle cell analysis in the browser
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scCATCHAutomatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
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Maaslin2MaAsLin2: Microbiome Multivariate Association with Linear Models
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trivy-vulnerability-explorerWeb application that allows to load a Trivy report in json format and displays the vulnerabilities of a single target in an interactive data table.
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kallistobustoolskallisto | bustools workflow for pre-processing single-cell RNA-seq data
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MINTIEMethod for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
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haystack bioHaystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
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pyreportspyreports is a python library that allows you to create complex report from various sources
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scTCRseqProcessing of single cell RNAseq data for the recovery of TCRs in python
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CellOCellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
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rnatoyA proof of concept RNA-Seq pipeline with Nextflow
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picardmetrics🚦 Run Picard on BAM files and collate 90 metrics into one file.
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Lighthouse CiA useful wrapper around Google Lighthouse CLI
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pipeCompA R framework for pipeline benchmarking, with application to single-cell RNAseq
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Allure Docker ServiceThis docker container allows you to see up to date reports simply mounting your "allure-results" directory in the container (for a Single Project) or your "projects" directory (for Multiple Projects). Every time appears new results (generated for your tests), Allure Docker Service will detect those changes and it will generate a new report automatically (optional: send results / generate report through API), what you will see refreshing your browser.
Stars: ✭ 194 (+977.78%)
dropClustVersion 2.1.0 released
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WebmapA Python tool used to automate the execution of the following tools : Nmap , Nikto and Dirsearch but also to automate the report generation during a Web Penetration Testing
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poreplexA versatile sequenced read processor for nanopore direct RNA sequencing
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gene-oracleFeature extraction algorithm for genomic data
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WebtauWebtau (short for web test automation) is a testing API, command line tool and a framework to write unit, integration and end-to-end tests. Test across REST-API, Graph QL, Browser, Database, CLI and Business Logic with consistent set of matchers and concepts. REPL mode speeds-up tests development. Rich reporting cuts down investigation time.
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Subread to DEXSeqScripts to import your FeatureCounts output into DEXSeq
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Sonar Cnes ReportGenerates analysis reports from SonarQube web API.
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MetaOmGraphMetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
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auditsSubset of public audit reports issued by ChainSecurity. For more, please visit:
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pyrpipeReproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Stars: ✭ 53 (+194.44%)
TCC-GUI📊 Graphical User Interface for TCC package
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FastreportFree Open Source Reporting tool for .NET6/.NET Core/.NET Framework that helps your application generate document-like reports
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AweDynamic web based reports/dashboards in Python
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ORNAFast in-silico normalization algorithm for NGS data
Stars: ✭ 21 (+16.67%)
UreportUReport2 is a high-performance pure Java report engine based on Spring architecture, where complex Chinese-style statements and reports can be prepared by iterating over cells.
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CICEROCICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
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rdocumentation-2.0📚 RDocumentation provides an easy way to search the documentation for every version of every R package on CRAN and Bioconductor.
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NGSNext-Gen Sequencing tools from the Horvath Lab
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NGI-RNAseqNextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Stars: ✭ 50 (+177.78%)
BeetleShake to create Bug Report on GitHub, GitLab and Azure DevOps!
Stars: ✭ 45 (+150%)
Ghpr.nunitAdapter for NUnit 3 (generate HTML report for NUnit 3)
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biomisc Rcommand line bioinformatic scripts written in R
Stars: ✭ 20 (+11.11%)
Netbox rich reportCreate a report of Netbox site with IP, VLANs, and prefixes
Stars: ✭ 23 (+27.78%)
rnafusionRNA-seq analysis pipeline for detection gene-fusions
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Jimureport积木报表,是一款免费的企业级低代码报表!类似于excel操作风格,在线拖拽完成报表设计!功能涵盖: 报表设计、图形报表、打印设计、大屏设计等,永久免费!领先的企业级Web报表软件,采用纯Web在线技术,专注于解决企业报表快速制作难题。
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microarray-analysisMaterials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)
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arribaFast and accurate gene fusion detection from RNA-Seq data
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IsoQuantReference-based transcript discovery from long RNA read
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RDLCPrinterWpf ReportViewer control and RDLCPrinter work with SQL Server LocalReport. You can export your report to PDF, Word or PNG Image...
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Protocols-4pubMulti-omics analysis protocols by Lyu.
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jtl-reporterJtlReporter is an online application that allows users to generate beautiful, customizable and easy to understand performance reports from JMeter(Taurus), Locust, and other tools.
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READemptionA pipeline for the computational evaluation of RNA-Seq data
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