75 Open source projects that are alternatives of or similar to Double-Sided-Assembly-Line-Balancing-with-Genetic-Algorithm

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Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

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De novo assembly from Oxford Nanopore reads.

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Analysis pipelines for sequencing data

Framework for Metastatic And Clonal History INtegrative Analysis

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Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products

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A Java API for high-throughput sequencing data (HTS) formats.

A package for designing compact and comprehensive capture probe sets.

Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]

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DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

AStarix: Fast and Optimal Sequence-to-Graph Aligner

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Improve the quality of a denovo assembly by scaffolding and gap filling

A repository for setting up a RNAseq workflow

parallelized blat with multi-threads support

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

FASTQ compression

A tool to circularize genome assemblies

Usage of genetic algorithms to train a neural network in multiple OpenAI gym environments.

A collection of scripts and notes related to genomics and bioinformatics

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Genomics Extension for SQLite

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Structural variant toolkit for VCFs

Scala API for jenetics

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Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

Collection of scripts for bacterial genomics

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FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files