All Projects → dropClust → Similar Projects or Alternatives

747 Open source projects that are alternatives of or similar to dropClust

RATTLE
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Stars: ✭ 35 (+84.21%)
Mutual labels:  rna-seq, genomics, clustering
genie
Genie: A Fast and Robust Hierarchical Clustering Algorithm (this R package has now been superseded by genieclust)
Stars: ✭ 21 (+10.53%)
Mutual labels:  clustering, cluster-analysis
2018 Machinelearning Lectures Esa
Machine Learning Lectures at the European Space Agency (ESA) in 2018
Stars: ✭ 280 (+1373.68%)
Mutual labels:  clustering, pca
Ml code
A repository for recording the machine learning code
Stars: ✭ 75 (+294.74%)
Mutual labels:  clustering, pca
Ml Course
Starter code of Prof. Andrew Ng's machine learning MOOC in R statistical language
Stars: ✭ 154 (+710.53%)
Mutual labels:  clustering, pca
clustering-python
Different clustering approaches applied on different problemsets
Stars: ✭ 36 (+89.47%)
Mutual labels:  clustering, cluster-analysis
northstar
Single cell type annotation guided by cell atlases, with freedom to be queer
Stars: ✭ 23 (+21.05%)
Mutual labels:  clustering, singlecell
scarf
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
Stars: ✭ 54 (+184.21%)
Mutual labels:  genomics, clustering
Nanny
A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and variable features.
Stars: ✭ 17 (-10.53%)
Mutual labels:  clustering, pca
AnnA Anki neuronal Appendix
Using machine learning on your anki collection to enhance the scheduling via semantic clustering and semantic similarity
Stars: ✭ 39 (+105.26%)
Mutual labels:  clustering, pca
Msmbuilder
🏗 Statistical models for biomolecular dynamics 🏗
Stars: ✭ 118 (+521.05%)
Mutual labels:  clustering, pca
CoronaDash
COVID-19 spread shiny dashboard with a forecasting model, countries' trajectories graphs, and cluster analysis tools
Stars: ✭ 20 (+5.26%)
Mutual labels:  clustering, cluster-analysis
genieclust
Genie++ Fast and Robust Hierarchical Clustering with Noise Point Detection - for Python and R
Stars: ✭ 34 (+78.95%)
Mutual labels:  clustering, cluster-analysis
Cilantro
A lean C++ library for working with point cloud data
Stars: ✭ 577 (+2936.84%)
Mutual labels:  clustering, pca
dee2
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
Stars: ✭ 32 (+68.42%)
Mutual labels:  rna-seq, genomics
Hdbscan
A high performance implementation of HDBSCAN clustering.
Stars: ✭ 2,032 (+10594.74%)
Mutual labels:  clustering, cluster-analysis
pyclustertend
A python package to assess cluster tendency
Stars: ✭ 38 (+100%)
Mutual labels:  clustering, cluster-analysis
clusters
Cluster analysis library for Golang
Stars: ✭ 68 (+257.89%)
Mutual labels:  clustering, cluster-analysis
watchman
Watchman: An open-source social-media event-detection system
Stars: ✭ 18 (-5.26%)
Mutual labels:  clustering
alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Stars: ✭ 78 (+310.53%)
Mutual labels:  rna-seq
wrangling-genomics
Data Wrangling and Processing for Genomics
Stars: ✭ 49 (+157.89%)
Mutual labels:  genomics
simplesam
Simple pure Python SAM parser and objects for working with SAM records
Stars: ✭ 50 (+163.16%)
Mutual labels:  genomics
CoNekT
CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.
Stars: ✭ 17 (-10.53%)
Mutual labels:  rna-seq
MetaOmGraph
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
Stars: ✭ 30 (+57.89%)
Mutual labels:  rna-seq
hclust
Hierarchical clustering in JavaScript
Stars: ✭ 39 (+105.26%)
Mutual labels:  clustering
pyrpipe
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Stars: ✭ 53 (+178.95%)
Mutual labels:  rna-seq
peeling-onions
A repository to store Deep Web (onion domain) crawler, scraper, and NLP tools for Tor network.
Stars: ✭ 18 (-5.26%)
Mutual labels:  clustering
ml
经典机器学习算法的极简实现
Stars: ✭ 130 (+584.21%)
Mutual labels:  pca
MTBseq source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Stars: ✭ 26 (+36.84%)
Mutual labels:  genomics
rare-disease-wf
(WIP) best-practices workflow for rare disease
Stars: ✭ 47 (+147.37%)
Mutual labels:  genomics
Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
Stars: ✭ 31 (+63.16%)
Mutual labels:  clustering
Fred
A fast, scalable and light-weight C++ Fréchet distance library, exposed to python and focused on (k,l)-clustering of polygonal curves.
Stars: ✭ 13 (-31.58%)
Mutual labels:  clustering
DBSCANSD
Java implementation for DBSCANSD, a trajectory clustering algorithm.
Stars: ✭ 35 (+84.21%)
Mutual labels:  clustering
calN50
Compute N50/NG50 and auN/auNG
Stars: ✭ 20 (+5.26%)
Mutual labels:  genomics
wdlRunR
Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources
Stars: ✭ 34 (+78.95%)
Mutual labels:  genomics
machine-learning-course
Machine Learning Course @ Santa Clara University
Stars: ✭ 17 (-10.53%)
Mutual labels:  clustering
hotspot3d
3D hotspot mutation proximity analysis tool
Stars: ✭ 43 (+126.32%)
Mutual labels:  clustering
shiny-iatlas
An interactive web portal for exploring immuno-oncology data
Stars: ✭ 43 (+126.32%)
Mutual labels:  genomics
gene-oracle
Feature extraction algorithm for genomic data
Stars: ✭ 13 (-31.58%)
Mutual labels:  rna-seq
slamdunk
Streamlining SLAM-seq analysis with ultra-high sensitivity
Stars: ✭ 24 (+26.32%)
Mutual labels:  rna-seq
arcsv
Complex structural variant detection from WGS data
Stars: ✭ 16 (-15.79%)
Mutual labels:  genomics
mnist-challenge
My solution to TUM's Machine Learning MNIST challenge 2016-2017 [winner]
Stars: ✭ 68 (+257.89%)
Mutual labels:  pca
perf
PERF is an Exhaustive Repeat Finder
Stars: ✭ 26 (+36.84%)
Mutual labels:  genomics
companion
This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
Stars: ✭ 21 (+10.53%)
Mutual labels:  genomics
magento-cluster
Highly Available and Auto-scalable Magento Cluster
Stars: ✭ 21 (+10.53%)
Mutual labels:  clustering
scclusteval
Single Cell Cluster Evaluation
Stars: ✭ 57 (+200%)
Mutual labels:  clustering
tailseeker
Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer
Stars: ✭ 17 (-10.53%)
Mutual labels:  rna-seq
MachineLearning
โค้ดประกอบเนื้อหา Python Machine Learning เบื้องต้น [2020]
Stars: ✭ 28 (+47.37%)
Mutual labels:  pca
DigitalCellSorter
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
Stars: ✭ 19 (+0%)
Mutual labels:  clustering
saffrontree
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
Stars: ✭ 17 (-10.53%)
Mutual labels:  genomics
enformer-pytorch
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
Stars: ✭ 146 (+668.42%)
Mutual labels:  genomics
ideal
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
Stars: ✭ 24 (+26.32%)
Mutual labels:  rna-seq
Python-Machine-Learning-Fundamentals
D-Lab's 6 hour introduction to machine learning in Python. Learn how to perform classification, regression, clustering, and do model selection using scikit-learn and TPOT.
Stars: ✭ 46 (+142.11%)
Mutual labels:  clustering
FSCNMF
An implementation of "Fusing Structure and Content via Non-negative Matrix Factorization for Embedding Information Networks".
Stars: ✭ 16 (-15.79%)
Mutual labels:  pca
dysgu
dysgu-SV is a collection of tools for calling structural variants using short or long reads
Stars: ✭ 47 (+147.37%)
Mutual labels:  genomics
mousetrap
Process and Analyze Mouse-Tracking Data
Stars: ✭ 33 (+73.68%)
Mutual labels:  clustering
SparseLSH
A Locality Sensitive Hashing (LSH) library with an emphasis on large, highly-dimensional datasets.
Stars: ✭ 127 (+568.42%)
Mutual labels:  clustering
clope
Elixir implementation of CLOPE: A Fast and Effective Clustering Algorithm for Transactional Data
Stars: ✭ 18 (-5.26%)
Mutual labels:  clustering
unimap
A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
Stars: ✭ 76 (+300%)
Mutual labels:  genomics
kmeans
K-Means clustering
Stars: ✭ 51 (+168.42%)
Mutual labels:  clustering
1-60 of 747 similar projects