54 Open source projects that are alternatives of or similar to fastqp

A DNA Sequence Alignment/Map (SAM) library for Clojure

Fast and accurate sequence demultiplexing

Frequently used commands in bioinformatics

My bioinfo toolbox

A template for an AWS SAM project with continuous integration.

Syntax highlighting for computational biology

The free embedded operating system.

A Java API for high-throughput sequencing data (HTS) formats.

Speech synthesis for ESP8266 using S.A.M. port

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.

This repo contains all the SAM templates created in the Twitch series #SessionsWithSAM. The show is every Thursday on Twitch at 10 AM PDT.

Airline Booking is a sample web application that provides Flight Search, Flight Payment, Flight Booking and Loyalty points including end-to-end testing, GraphQL and CI/CD. This web application was the theme of Build on Serverless Season 2 on AWS Twitch running from April 24th until end of August in 2019.

Learning the Sequence Alignment/Map format

Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too

AWS Serverless Application Model (SAM) is an open-source framework for building serverless applications

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

Directory Services Internals (DSInternals) PowerShell Module and Framework

A boilerplate Go and AWS Lambda app. Demonstrates an expert configuration of 10+ AWS services to support running Go functions-as-a-service (FaaS).

CLI tool to build, test, debug, and deploy Serverless applications using AWS SAM

C library for high-throughput sequencing data formats

AWS Toolkit for JetBrains - a plugin for interacting with AWS from JetBrains IDEs

Run Node.js web applications and APIs using existing application frameworks on AWS #serverless technologies such as Lambda, API Gateway, Lambda@Edge, and ALB.

Tools for working with SAM/BAM data

Welcome to the Innovator Island serverless workshop! This repo contains all the instructions and code you need to complete the workshop. Questions? Contact @jbesw.

SAM: Sharpness-Aware Minimization (PyTorch)

A graphical text editor

A simple/sample AngularV4-based web app that demonstrates different API authentication options using Amazon Cognito and API Gateway with an AWS Lambda and Amazon DynamoDB backend that stores user details in a complete end to end Serverless fashion.

A lightweight middleware framework for functions as a service

A D library for computational biology and bioinformatics

SAM: Software Automatic Mouth (Ported from https://github.com/vidarh/SAM)

A PyTorch implementation of Sharpness-Aware Minimization for Efficiently Improving Generalization

Simple pure Python SAM parser and objects for working with SAM records

pythonic wrapper for htslib

AWS SAM build images

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

QP real-time embedded frameworks/RTOS for Arduino (AVR and SAM)

Hands-On Serverless Applications with Go, published by Packt.

A stand-alone implementation of the Acme text editor's command language.

A tool to backup and restore AWS Connect, with some useful other utilities too

A Visual Effects pipeline to manage jobs, shots and software assignment, with a simple asset manager. Its extensively integrated with CortexVFX and Gaffer. (and it builds booth, with support for Maya, Houdini and Nuke, if you have then installed!)

General Purpose Input/Output (GPIO) library for Arduino

This project is an example about lambda, SAM, dynamodb. This repository contains source code and supporting files for a serverless application that you can deploy with the SAM CLI. It includes the following files and folders.

Action to set up AWS SAM CLI and add it to the PATH

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

A simple tool to calculate reads number and total base count in FASTQ file

Bioinformatics library in Kotlin

Efficient handling of FASTQ files from Python

Command line utility for manipulating Illumina-generated FastQ files.

Exome/Capture/RNASeq Pipeline Implementation using snakemake

💾 📃 "Reads to report" for public health and clinical microbiology

Sync paired-end FASTA/Q files and keep singleton reads