125 Open source projects that are alternatives of or similar to fuc

A DNA Sequence Alignment/Map (SAM) library for Clojure

Syntax highlighting for computational biology

Bioinformatics library in Kotlin

Fast and accurate sequence demultiplexing

My bioinfo toolbox

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

Simple pure Python SAM parser and objects for working with SAM records

Simple FASTQ quality assessment using Python

A Java API for high-throughput sequencing data (HTS) formats.

Sync paired-end FASTA/Q files and keep singleton reads

pythonic wrapper for htslib

A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)

Home of the Genomic Feature and Variation Ontology (GFVO)

A D library for computational biology and bioinformatics

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

C library for high-throughput sequencing data formats

Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too

💾 📃 "Reads to report" for public health and clinical microbiology

tidy processing of biological sequences in R

📊Evaluating, filtering, comparing, and visualising VCF

common useful script

Efficient handling of FASTQ files from Python

Spark VCF data source implementation for Dataframes

A tool to backup and restore AWS Connect, with some useful other utilities too

General Purpose Input/Output (GPIO) library for Arduino

Software for prediction of plasmid sequences in metagenomic assemblies

Action to set up AWS SAM CLI and add it to the PATH

Learning the Variant Call Format

Utilities for analyzing next generation sequencing data.

command lines tool to annotate miRNAs with a standard mirna/isomir naming

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

find large indels (in the blind spot between GATK/freebayes and SV callers)

Hands-On Serverless Applications with Go, published by Packt.

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

simple viewer for variant call format using htslib

Same species annotation lift over pipeline.

A Visual Effects pipeline to manage jobs, shots and software assignment, with a simple asset manager. Its extensively integrated with CortexVFX and Gaffer. (and it builds booth, with support for Maya, Houdini and Nuke, if you have then installed!)

QP real-time embedded frameworks/RTOS for Arduino (AVR and SAM)

This project is an example about lambda, SAM, dynamodb. This repository contains source code and supporting files for a serverless application that you can deploy with the SAM CLI. It includes the following files and folders.

Cancer Predisposition Sequencing Reporter (CPSR)

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

A template for an AWS SAM project with continuous integration.

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

command line bioinformatic scripts written in R

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

A fluent builder class for vCard files.

tools for reading, writing, merging, and remapping SNPs

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

convert 23andme or Ancestry.com raw genotype calls into VCF format, with dbSNP annotations

vembrane filters VCF records using python expressions

A handy variant calling pipeline generator for whole genome re-sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.

Powerful statistics for VCF files

A stand-alone implementation of the Acme text editor's command language.

🔧 Simple script in python to convert CSV files to VCF

Python-based UCSC genome browser snapshot-taker and gallery-maker

The free embedded operating system.

nest-rabbit-worker is a TaskQueue based upon RabbitMQ for NestJS