cucimNo description or website provided.
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OADCollection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
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cellfinderAutomated 3D cell detection and registration of whole-brain images
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Scripts🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
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sparse-deconv-pyOfficial Python implementation of the 'Sparse deconvolution'-v0.3.0
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image spaceInteractive Image similarity and Visual Search and Retrieval application
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ImageMGUI for Image processing with Matlab
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ColiCoordsSingle-cell fluorescence microscopy data analysis
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GARIGARI (Genetic Algorithm for Reproducing Images) reproduces a single image using Genetic Algorithm (GA) by evolving pixel values.
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ImSwitchImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
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Image Match🎇 Quickly search over billions of images
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computer-vision-notebooks👁️ An authorial set of fundamental Python recipes on Computer Vision and Digital Image Processing.
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OMETIFF.jlI/O operations for OME-TIFF files in Julia
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impySpeed up coding/extending image analysis in Python.
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SmartImageReverse image search tool (SauceNao, ImgOps, trace.moe, and more)
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segmentationCode for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.
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Image JsImage processing and manipulation in JavaScript
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PelPHP Exif Library - library for reading and writing Exif headers in JPEG and TIFF files using PHP.
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Python Computer Vision from ScratchThis repository explores the variety of techniques commonly used to analyze and interpret images. It also describes challenging real-world applications where vision is being successfully used, both for specialized applications such as medical imaging, and for fun, consumer-level tasks such as image editing and stitching, which students can apply…
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ResdetDetect source resolution of upscaled images
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Image QualityImage quality is an open source software library for Image Quality Assessment (IQA).
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MindboggleAutomated anatomical brain label/shape analysis software (+ website)
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axondeepsegAxon/Myelin segmentation using Deep Learning
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QuadTreeAndroidLibrary that helps to implement the QuadTree in android, by using splitting images
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ViewersThe OHIF Medical Imaging Viewer is for viewing medical images. It can retrieve
and load images from most sources and formats; render sets in 2D, 3D, and
reconstructed representations; allows for the manipulation, annotation, and
serialization of observations; supports internationalization, OpenID Connect,
offline use, hotkeys, and many more features.
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Slicer-DeepInfer3D Slicer Module for connecting to model repository and use models for image analysis.
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odemisOpen Delmic Microscope Software
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MorphoLibJCollection of mathematical morphology methods and plugins for ImageJ
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ITKSphinxExamplesCookbook examples for the Insight Toolkit documented with Sphinx
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Quantitative-Big-Imaging-2018(Latest semester at https://github.com/kmader/Quantitative-Big-Imaging-2019) The material for the Quantitative Big Imaging course at ETHZ for the Spring Semester 2018
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MiM NikonTiConfig and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.
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pyLatticeA python library for advanced lattice light-sheet image analysis
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Image SizeNode module for detecting image dimensions
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TexturizeA unified framework for example-based texture synthesis, developed alongside my master's thesis.
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MicroscPSF-PyFast and Accurate 3D PSF Computation for Fluorescence Microscopy
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goexif2MAINTAINER WANTED -- Decode embedded EXIF meta data from image files written in Pure Golang
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picassoA collection of tools for painting super-resolution images
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miplibA Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
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PorespyA set of tools for characterizing and analying 3D images of porous materials
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PyimsegmImage segmentation - general superpixel segmentation & center detection & region growing
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fastimageFind the type or size of an image
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Imago ForensicsImago is a python tool that extract digital evidences from images.
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awesome-cytodataA curated list of awesome cytodata resources
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ImageprocessingMicaSense RedEdge and Altum image processing tutorials
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brainregAutomated 3D brain registration with support for multiple species and atlases.
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ImagefeaturedetectorA C++ Qt GUI desktop program to calculate Harris, FAST, SIFT and SURF image features with OpenCV
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ome-typesnative Python dataclasses for the OME data model
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SodAn Embedded Computer Vision & Machine Learning Library (CPU Optimized & IoT Capable)
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ggimgggimg: Graphics Layers for Plotting Image Data with ggplot2
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squidpySpatial Single Cell Analysis in Python
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Smart Security CameraA Pi Zero and Motion based webcamera that forwards images to Amazon Web Services for Image Processing
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SyConnToolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
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napari-aicsimageioMultiple file format reading directly into napari using pure Python
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colocrAn R package for conducting co-localization analysis. Edit
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micromanager-samplesPython samples for Micro-Manager: image acquisition and microscope control system
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fpzipCython bindings for fpzip, a floating point image compression algorithm.
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