235 Open source projects that are alternatives of or similar to mne-bids

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

MATLAB / Octave tools for BIDS datasets

3D Visualization of Brain MRI

MNELAB – a GUI for MNE

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python 🧠🔧

The MATLAB toolbox for MEG, EEG and iEEG analysis

MATLAB/Octave GIfTI Library

BIDScoin converts your source-level neuroimaging data to BIDS

fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.

A C++ package for low-frequency bio-electromagnetism solving forward problems in the field of EEG and MEG.

Core methods and structures for neuroscience research in Julia.

BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

EntroPy: complexity of time-series in Python (DEPRECATED)

Parameterizing neural power spectra into periodic & aperiodic components.

eelbrain.readthedocs.io

Matlab toolbox for univariate and multivariate analysis of EEG data in the time and frequency domains

Neuroimaging in Julia

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

AntroPy: entropy and complexity of (EEG) time-series in Python

Example with Cortex V2 API

Software platform for clinical neuroimaging studies

Python package for covariance matrices manipulation and Biosignal classification with application in Brain Computer interface

A Python Toolbox for Statistics and Neurophysiological Signal Processing (EEG, EDA, ECG, EMG...).

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

Method container for computational neuroscience on brains.

NeuroInformatics Database

A set of BIDS compatible datasets with empty raw data files that can be used for writing lightweight software tests.

A fullstack javascript app for capturing and visualizing OpenBCI EEG data

python implementations of Analyzing Neural Time Series Textbook

TAPAS - Translational Algorithms for Psychiatry-Advancing Science

Deep Learning with Tensor Flow for EEG MNE Epoch Objects

Graph theory analysis of brain MRI data

CS198-96: Intro to Neurotechnology @ UC Berkeley

MNE-CPP: A Framework for Electrophysiology

Simulation and optimization of neural circuits for MEG/EEG source estimates

A Collection Python EEG (+ ECG) Analysis Utilities for OpenBCI and Muse

Mother of All BCI Benchmarks

A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG

medical image visualization library and development toolkit

Multi-modal Image Registration And Connectivity anaLysis

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Blackrock Microsystems Cerebus Link for Neural Signal Processing

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

A lightweight I/O utility for the BrainVision data format, written in Python.

Brain Imaging Analysis Kit

Python machine learning package based on sklearn API for multivariate data processing and statistical analysis of symmetric positive definite matrices via Riemannian geometry

Utility functions for working with DICOM and BIDS neuroimaging data

Brain Dynamics Programming in Python

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

Automated 3D brain registration with support for multiple species and atlases.

Python 3 library for analysis of neuroanatomical data

Data and example scripts used in the paper `Inferring hidden structure in multilayered neural circuits`

MSc thesis on: Classifying brain activity using EEG and automated time tracking of computer use (using ActivityWatch)

📊 Gene expression in neuroexpresso database

Code Generation Framework For NEURON MODeling Language

Deep learning in a spiking neural network using segregated dendrites.

Database for experimental neuroscience laboratories