441 Open source projects that are alternatives of or similar to MSFragger

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

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SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning

Highly adaptable common interface for proteomics search and de novo engines

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No description or website provided.

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Open source Java library for computational proteomics

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Mulled - Automatized Containerized Software Repository

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

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MView extracts and reformats the results of a sequence database search or multiple alignment.

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A curated list of awesome bioinformatics software.

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Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)

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SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

🐛 How to use CENTIPEDE to determine if a transcription factor is bound.

Provide R access to the NCI Genomic Data Commons portal.

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exploratory and interactive microbiome analyses based on heatmaps

Useful bioinformatic scripts

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

Feature extraction algorithm for genomic data

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Read DNA sequences from colourful Microsoft Word documents

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My own tools code for NGS data analysis (Next Generation Sequencing)

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MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

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Read and write FASTQ and FASTA efficiently from Python