670 Open source projects that are alternatives of or similar to Msprime

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

Ab initio simulator for thermal transport and lattice anharmonicity

Plugin for Unreal Engine 4 with simple force-driven vehicle simulation

Script to automatically create and run IGV snapshot batchscripts

Unknown Horizons official code repository

Multi-Agent Robotics Simulator

Open source robotics simulator. Through Ignition Gazebo users have access to high fidelity physics, rendering, and sensor models. Additionally, users and developers have multiple points of entry to simulation including a graphical user interface, plugins, and asynchronous message passing and services. Ignition Gazebo is derived from Gazebo, and represents over 16 years of development and experience in robotics and simulation. This library is part of the Ignition Robotics project.

A 𝒔𝒕𝒆𝒍𝒍𝒂𝒓 simulated 8-bit computer architecture

Frequency-domain photonic simulation and inverse design optimization for linear and nonlinear devices

OMNeT++的仿真手册

Maze Applied Reinforcement Learning Framework

Python toolbox / library for power system transient dynamics simulation with symbolic modeling and numerical analysis 🔥

WebGL simulation of a Schwarzschild black hole

Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.

Models of COVID-19 outbreak trajectories and hospital demand

The Complete Street Rule for ArcGIS CityEngine is a scenario oriented design tool intended to enable users to quickly create procedurally generated multimodal streets.

Mesa is an agent-based modeling framework in Python

Bayesian genotyper for structural variants

🌇 A simulation of a city using isometric tiles

A fast whole-genome aligner based on de Bruijn graphs

Genomics Extension for SQLite

Flexible genotype query among 30,000+ samples whole-genome

Antimicrobial Resistance Identification By Assembly

😎 A curated list of robotics libraries and software

Repository to accompany RSS 2018 paper on dexterous hand manipulation

Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

A curated list of software emulators and simulators of PCs, home computers, mainframes, consoles, robots and much more...

Network on Chip Simulator

Framework for developing OpenAI Gym robotics environments simulated with Ignition Gazebo

Conway's Game of Life implemented with Go and OpenGL.

Webots Robot Simulator

Pharmaceutical Modeling and Simulation for Nonlinear Mixed Effects (NLME), Quantiative Systems Pharmacology (QsP), Physiologically-Based Pharmacokinetics (PBPK) models mixed with machine learning

A 3D physics engine

LiDAR-Inertial 3D Plane Simulator

COVID-19 SIR model estimation

Pan-genome wide association studies

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Tool suite for kappa models. Documentation and binaries can be found in the release section. Try it online at

IoT Simulation service

Dan Koschier, Jan Bender, Barbara Solenthaler, Matthias Teschner, "Smoothed Particle Hydrodynamics for Physically-Based Simulation of Fluids and Solids", Eurographics Tutorial, 2019

Arduino (8-bit AVR) simulator, written in JavaScript and runs in the browser / Node.js

Project Home repo for Central Dockerfile and Project-wide issues

Bioinformatics library for .NET

An interactive web tool for quality control of DNA sequencing data

This project has moved to https://git.dynare.org/Dynare/dynare

A tribute to Mad TV. Written in BlitzMax, Lua and a bit of C.

A statistical framework that serves as a common interface to a large range of models

Arrays with arbitrarily nested named components.

Collective variables module for molecular simulation and analysis programs

3D physics engine for D

A basic free-surface liquid FLIP fluid simulator with viscosity

Add-on for Blender to connect rigid bodies via constraints in a physical plausible way. (You only need the ZIP file for installation in Blender. Click the filename and at the next page "Download", right click and "Save As" won't work!)

AQUAS TF and histone ChIP-seq pipeline

Comprehensive list of resources on the topic of digital morphogenesis (the creation of form through code). Includes links to major articles, code repos, creative projects, books, software, and more.

Fast creation and configuration of topologies, traffic matrices and event schedules for network experiments

A collection of scripts and notes related to genomics and bioinformatics

An open source re-implementation of RollerCoaster Tycoon 2 🎢

GCP Essentials for Bioinformatics Researchers

This repository intends to enable autonomous drone delivery with the Intel Aero RTF drone and PX4 autopilot. The code can be executed both on the real drone or simulated on a PC using Gazebo. Its core is a robot operating system (ROS) node, which communicates with the PX4 autopilot through mavros. It uses SVO 2.0 for visual odometry, WhyCon for visual marker localization and Ewok for trajectoy planning with collision avoidance.