284 Open source projects that are alternatives of or similar to mustache

Large genome reassembly based on Hi-C data, continuation of GRAAL

A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains

TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C

A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

Improve the quality of a denovo assembly by scaffolding and gap filling

Docker for 4DN Hi-C processing pipeline

simple viewer for variant call format using htslib

Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Bead-based single-cell atac processing

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

A bioinformatics API and web-app to integrate multi-omics datasets & interface with public databases.

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

A secure encryption tool for genomic data

Explore rearrangements and copy-number amplifications in a cancer genome

The GenePattern Server web application

DriverPower

A fast tool for hybrid genome assembly of long and short reads

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

a pileup library that embraces the huge

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Examples to get started with IBM Functional Genomics Platform

Collection of scripts for bacterial genomics

Introduction to the Command Line for Genomics

Big Compute Learning Labs

DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data

WebAssembly modules for genomics

ntHash implementation in Rust

A library for manipulating bioinformatics sequencing formats in Apache Spark

A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

Identify phage regions in bacterial genomes for masking purposes

GA4GH Variation Representation Python Implementation

Forward-time simulation in Python using fwdpp

Transcripts annotation and GO enrichment Fisher tests

Genome Annotation Without Nightmares

use the noise

phenol: Phenotype ontology library

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

Analysing Capture Seq Count Data

Phage-Host Interaction Search Tool

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

Explore gnomAD datasets on the web

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

Bioconductor package for management of multi-assay data

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

Ultrafast sequence typing and gene detection from NGS raw reads

Finds SNP sites from a multi-FASTA alignment file

Spark VCF data source implementation for Dataframes

Performs memory-efficient reservoir sampling on very large input files delimited by newlines

Manhattan plot Generator

Biopython Jupyter Notebook tutorial to characterize a small genome

Nextflow basic tutorial for newbie users

simuG: a general-purpose genome simulator

CUT&RUN and CUT&Tag data processing and analysis

🐳 Bio-dockers: dockerized bioinformatic tools

Numerical Encoding for Human Genetic Variants

simplified searching, fetching, and parsing records from NCBI using their E-utilities interface