1774 Open source projects that are alternatives of or similar to Obofoundry.github.io

A Rails application for biological ontologies

A powerful open source data warehouse system

Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

Curated from repositories that make our lives as geoscientists, hackers and data wranglers easier or just more awesome

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

annotate a VCF with other VCFs/BEDs/tabixed files

Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb

Protwis is the backbone of the GPCRdb. The GPCRdb contains reference data, interactive visualisation and experiment design tools for G protein-coupled receptors (GPCRs).

The sources of the openSNP website

Project metadata manager for PEPs in Python

GenomeTools genome analysis system.

🌐 linkedresearch.org

A list of openly available software tools for (mostly human) electrophysiology.

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data

Javascript full-stack framework for Big Data visualisation and analysis

Scientific code needs to be open source and peer reviewed

Cookbook examples for the Insight Toolkit documented with Sphinx

The Ontology for Biomedical Investigations

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Module 5: Open Research Software and Open Source

DeveelDB is a complete SQL database system, primarly developed for .NET/Mono frameworks

The code repository for the prototypes included in the eBook "Inspired EHRs - Designing for Clinicians" (inspiredEHRs.gov). The code of the prototypes is made available under the Apache 2.0 open source license. This license agreement allows anyone to freely use the code and ideas presented in this book, subject to the conditions listed at http://opensource.org/licenses/Apache-2.0.

EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.

GO enrichment with python -- pandas meets networkx

SquiggleKit: A toolkit for manipulating nanopore signal data

A JSON-LD Processor and API implementation in JavaScript

Open-source tag-based image hosting search engine for Android

sky driver & cloud driver open source server application : kiftd . welcome to the home page: https://kohgylw.gitee.io/ to quick start——kiftd是一款专门面向个人、团队和小型组织的私有网盘系统。轻量、开源、完善。无论是在家庭、学校还是在办公室，您都能立刻开始使用它！了解更多请访问官方网站：

GCTT Go中文网翻译组。

Start Bootstrap is an open source library of free Bootstrap templates and themes. All of the free templates and themes on Start Bootstrap are released under the MIT license, which means you can use them for any purpose, even for commercial projects.

A Beginner's Guide to Contributing in an Open Source Project.

3D Printable 3:1 Geared Extruder

Scrape data from websites using Open Graph, HTML metadata & fallbacks.

Conda recipes for the bioconda channel.

Provide route generator to create route map quickly by annotations.

Bayesian genotyper for structural variants

A three column Bootstrap HTML portfolio template - created by Start Bootstrap

MyGene.info: A BioThings API for gene annotations

Model-driven REST or GraphQL backend for CRUD and more, written in Javascript, using Node.js, Express, and PostgreSQL.

Superdesk Publisher - the next generation publishing platform for journalists and newsrooms.

A powerful 2D projectile system module for Godot!

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List of tools and resources related to the 10x Genomics GEMCode/Chromium system

FreeSWITCH is a Software Defined Telecom Stack enabling the digital transformation from proprietary telecom switches to a versatile software implementation that runs on any commodity hardware. From a Raspberry PI to a multi-core server, FreeSWITCH can unlock the telecommunications potential of any device.

Manage labels on GitHub as code

Bundle definitions for Clear Linux OS

Structural variant toolkit for VCFs

Development environment for Meedan Check, a collaborative media annotation platform

An experiment in open source at the Department of Defense.

🗳 minimal-feedback is a blazingly fast and highly customizable component to get user feedback.

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Interactive code editor with a live binary tree visual designed to teach new developers the fundamentals of dynamic programming.

Biological sequences for the julia language

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R package to interface with OpenML

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