cpsrCancer Predisposition Sequencing Reporter (CPSR)
Stars: ✭ 44 (+25.71%)
ssGSEA2.0Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
Stars: ✭ 153 (+337.14%)
HK-journalistAn Auto Report Generator for Python Programs
Stars: ✭ 68 (+94.29%)
lightdockProtein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Stars: ✭ 110 (+214.29%)
IARC-nfList of IARC bioinformatics nextflow pipelines
Stars: ✭ 34 (-2.86%)
lung-image-analysisA basic framework for pulmonary nodule detection and characterization in CT
Stars: ✭ 26 (-25.71%)
contextual-aiContextual AI adds explainability to different stages of machine learning pipelines - data, training, and inference - thereby addressing the trust gap between such ML systems and their users. It does not refer to a specific algorithm or ML method — instead, it takes a human-centric view and approach to AI.
Stars: ✭ 81 (+131.43%)
dsspApplication to assign secondary structure to proteins
Stars: ✭ 56 (+60%)
GeneFuseGene fusion detection and visualization
Stars: ✭ 90 (+157.14%)
MEGADOCKAn ultra-high-performance protein-protein docking for heterogeneous supercomputers
Stars: ✭ 28 (-20%)
leilaLibrería para la evaluación de calidad de datos, e interacción con el portal de datos.gov.co
Stars: ✭ 56 (+60%)
GeneTonicEnjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Stars: ✭ 66 (+88.57%)
query2reportQuery2Report is a simple open source business intelligence platform that allows users to build report/dashboard for business analytics or enterprise reporting
Stars: ✭ 43 (+22.86%)
jobofferbackendThis project is a real-world example of DDD in a backend application It applies the concept of Entity, Value Object, Root, Aggregate, Services, Repositories and Ubiquitous Language.
Stars: ✭ 15 (-57.14%)
pmartRThe pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data. This includes data transformation, specification of groups that are to be …
Stars: ✭ 19 (-45.71%)
carboneFast and simple report generator, from JSON to pdf, xslx, docx, odt...
Stars: ✭ 810 (+2214.29%)
CellReportCellReport 是一个netcore实现的、以复杂统计报表为核心目标的制作、运行工具。支持数据看板、大屏制作。你可以使用数据库、excel文件、api服务、已有报表等为数据源,通过内置的集合函数组织数据,以类excel界面设计最终呈现结果。
Stars: ✭ 196 (+460%)
contact mapContact map analysis for biomolecules; based on MDTraj
Stars: ✭ 27 (-22.86%)
cancer-dataTCGA data acquisition and processing for Project Cognoma
Stars: ✭ 17 (-51.43%)
deeprankDeep learning framework for data mining protein-protein interactions using CNN
Stars: ✭ 99 (+182.86%)
civic-serverBackend Server for CIViC Project
Stars: ✭ 39 (+11.43%)
psipredPSIPRED Protein Secondary Structure Predictor
Stars: ✭ 38 (+8.57%)
arribaFast and accurate gene fusion detection from RNA-Seq data
Stars: ✭ 162 (+362.86%)
SlicerRadiomicsA Slicer extension to provide a GUI around pyradiomics
Stars: ✭ 83 (+137.14%)
pyreportspyreports is a python library that allows you to create complex report from various sources
Stars: ✭ 78 (+122.86%)
ci4cc-informatics-resourcesCommunity-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.
Stars: ✭ 22 (-37.14%)
progenImplementation and replication of ProGen, Language Modeling for Protein Generation, in Jax
Stars: ✭ 71 (+102.86%)
pathfindRpathfindR: Enrichment Analysis Utilizing Active Subnetworks
Stars: ✭ 138 (+294.29%)
mageriMAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers
Stars: ✭ 19 (-45.71%)
mmtf-sparkMethods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Stars: ✭ 20 (-42.86%)
cacaoCallable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
Stars: ✭ 21 (-40%)
superacao-appAplicativo para o projeto "Anjos do SuperAção"
Stars: ✭ 17 (-51.43%)
Porter5Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes
Stars: ✭ 39 (+11.43%)
TCGAbiolinksGUITCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
Stars: ✭ 32 (-8.57%)
haddocking.github.ioWebpage of the Bonvinlab @ Utrecht University and HADDOCK software
Stars: ✭ 14 (-60%)
FineCodeCoverageVisualize unit test code coverage easily for free in Visual Studio Community Edition (and other editions too)
Stars: ✭ 391 (+1017.14%)
pytorch-rgnRecurrent Geometric Network in Pytorch
Stars: ✭ 28 (-20%)
2020plusClassifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
Stars: ✭ 44 (+25.71%)
MINTIEMethod for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
Stars: ✭ 24 (-31.43%)
Front-EndFederated Learning based Deep Learning. Docs: https://fets-ai.github.io/Front-End/
Stars: ✭ 35 (+0%)
RNAseq titration resultsCross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
Stars: ✭ 22 (-37.14%)
civic-clientWeb client for CIViC: Clinical Interpretations of Variants in Cancer
Stars: ✭ 49 (+40%)
OmiEmbedMulti-task deep learning framework for multi-omics data analysis
Stars: ✭ 16 (-54.29%)
GenomicDataCommonsProvide R access to the NCI Genomic Data Commons portal.
Stars: ✭ 64 (+82.86%)
smartas📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
Stars: ✭ 13 (-62.86%)
shiny-iatlasAn interactive web portal for exploring immuno-oncology data
Stars: ✭ 43 (+22.86%)
hotspot3d3D hotspot mutation proximity analysis tool
Stars: ✭ 43 (+22.86%)
civicmineText mining cancer biomarkers for the CIVIC database
Stars: ✭ 19 (-45.71%)
classifying-cancerA Python-Tensorflow neural network for classifying cancer data
Stars: ✭ 30 (-14.29%)
TexomerTexomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
Stars: ✭ 19 (-45.71%)
mmtf-workshop-2018Structural Bioinformatics Training Workshop & Hackathon 2018
Stars: ✭ 50 (+42.86%)
FunFolDesDataRosetta FunFolDes – a general framework for the computational design of functional proteins.
Stars: ✭ 15 (-57.14%)
FastreportFree Open Source Reporting tool for .NET6/.NET Core/.NET Framework that helps your application generate document-like reports
Stars: ✭ 1,688 (+4722.86%)
rktree.cljcTrees where leaves are located both in time and space
Stars: ✭ 15 (-57.14%)
prioraAn Object Prioritization Utility for Ruby
Stars: ✭ 30 (-14.29%)
CARNIVALCAusal Reasoning for Network Identification with integer VALue programming in R
Stars: ✭ 33 (-5.71%)
EVcouplingsEvolutionary couplings from protein and RNA sequence alignments
Stars: ✭ 113 (+222.86%)