795 Open source projects that are alternatives of or similar to qmflows

Benchmark Suite for Machine Learning Interatomic Potentials for Materials

Plant image analysis using OpenCV

A curated list of science- and engineering related repositories on GitHub and in neighboring counties

Data intensive science for everyone.

A collection of scripts and notes related to genomics and bioinformatics

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

chemical graph theory library for JavaScript

A curated list of Cheminformatics libraries and software.

Rapid and flexible acquisition, analysis, fitting, and plotting in Python. Designed for scientific laboratories.

A repository for setting up a RNAseq workflow

Molecular dynamics simulation software

Python package providing some useful tools when dealing with molecules and materials under periodic boundary conditions and uniform grids. This is a mirror of https://gitlab.com/ales.genova/pbcpy

Signal-level algorithms for MinION data

🔬 Assemble large genomes using short reads

🌈Scaffold genome sequence assemblies using linked read sequencing data

The Chemistry Development Kit

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

Java utilities for Bioinformatics

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

UGENE is free open-source cross-platform bioinformatics software

NGLess: NGS with less work

🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)

Curated (meta)list of resources for Biology.

Python Materials Discovery Framework

A library of free open source icons for science illustrations in biology and chemistry

An analysis and visualization platform for 'omics data

A package for designing compact and comprehensive capture probe sets.

Proton Exchange Membrane (PEM) Fuel Cell Dataset

Chemistry, Gamified

APBS - software for biomolecular electrostatics and solvation

Official code repository for GATK versions 4 and up

Periodic elements data

A library for using chemistry in your applications

Scientific Computing for Chemists text for teaching basic computing skills to chemistry students using Python, Jupyter notebooks, and the SciPy stack. This text makes use of a variety of packages including NumPy, SciPy, matplotlib, pandas, seaborn, NMRglue, SymPy, scikit-image, and scikit-learn.

Data and analysis for the Splatter paper

Periodum: An Interactive, Open-Source Periodic Table!

🧪 A comprehensive chemistry library for Python.

Atomic - Periodic Table

code for "A global pathway selection algorithm for the reduction of detailed chemical kinetic mechanisms" (Gao et al., CNF'16)

MMseqs2 app to run on your workstation or servers

Version 2020 (3.1) of Chem4Word - A Chemistry Add-In for Microsoft Word

No description or website provided.

WebLogo 3: Sequence Logos redrawn

OpenJij : Framework for the Ising model and QUBO.

OpenFLUID framework and applications

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

Phylogenetic trees in Julia

Quantum emulator of the IBM Quantum experience

Curated list of bioinformatics formats and publications

A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification and a web application for managing and executing those WES services.

ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

The Ontology for Biomedical Investigations

Build and maintain multiple custom conda environments all in once place.

Client for the Crossref API

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search

For live demo, see http://lh3lh3.users.sourceforge.net/bioseq.shtml

An Innovative Salient Object Detection Using Center-Dark Channel Prior

Earl Grey: A fully automated TE curation and annotation pipeline

No description or website provided.