590 Open source projects that are alternatives of or similar to Ribbon

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

Data intensive science for everyone.

Proof-of-concept seq-to-graph mapper and graph generator

Intuitive local web frontend for the BLAST bioinformatics tool

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Official git repository for Biopython (originally converted from CVS)

cython + htslib == fast VCF and BCF processing

Haplotype VCF comparison tools

An ultrafast memory-efficient short read aligner

A simple command-line tool to download data from Joint Genome Institute databases

A collection of scripts and notes related to genomics and bioinformatics

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

Inference of ploidy and heterozygosity structure using whole genome sequencing data

PERF is an Exhaustive Repeat Finder

Antimicrobial Resistance Identification By Assembly

dysgu-SV is a collection of tools for calling structural variants using short or long reads

Compute N50/NG50 and auN/auNG

🌈Scaffold genome sequence assemblies using linked read sequencing data

A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

NGLess: NGS with less work

Assembling the cause of phenotypes and genotypes from NGS data

Provide R access to the NCI Genomic Data Commons portal.

Genomics Extension for SQLite

An open-access bioinformatics text

Predict plasmids from uncorrected long read data

A curated list of awesome bioinformatics software.

BACNET is a Java based platform to develop website for multi-omics analysis

annotate a VCF with other VCFs/BEDs/tabixed files

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Viral genomics analysis pipelines

Example client programs for Saphetor's VarSome annotation API

An open source platform for managing and analyzing biomedical big data

A high-performance, Pythonic language for bioinformatics

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

A fast and sensitive gapped read aligner

Ultra-fast and memory-efficient (meta-)genome assembler

The next version of bwa-mem

Java utilities for Bioinformatics

Bayesian genotyper for structural variants

Scripts to download genomes from the NCBI FTP servers

Ten Quick Tips for Deep Learning in Biology

Reads simulator

An interactive web tool for quality control of DNA sequencing data

Efficient variant-call data storage and retrieval library using the TileDB storage library.

Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model

De novo assembly based variant calling pipeline for Illumina short reads

Scalable genomic data analysis.

Model and predict short DNA sequence features with neural networks

Deep learning infrastructure for bioinformatics

A cool place to store your Hi-C

An efficient FASTQ manipulation suite

Bio4j abstract model and general entry point to the project

Tools for working with genomic and high throughput sequencing data.

UGENE is free open-source cross-platform bioinformatics software

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Benchmarking programming languages/implementations for common tasks in Bioinformatics

parallel fastq-dump wrapper