493 Open source projects that are alternatives of or similar to RNASeq

RNA-seq analysis pipeline for detection gene-fusions

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer

A repository for setting up a RNAseq workflow

Analysis pipelines for sequencing data

A graphical user interface for distributed data processing of high throughput genomics

A python-based isomiR quantification and analysis pipeline

An automated RNA-seq pipeline using Nextflow

Data intensive science for everyone.

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

UGENE is free open-source cross-platform bioinformatics software

Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.

Precision HLA typing from next-generation sequencing data

Feature extraction algorithm for genomic data

SciKIt-learn Pipeline in PAndas

A package for designing compact and comprehensive capture probe sets.

💻 Learn Bash streams, pipelines and redirection, from beginner to advanced.

Pipeline for initial analysis of droplet-based single-cell RNA-seq data

Assembling the cause of phenotypes and genotypes from NGS data

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Today I Learned

Prometheus spot instance exporter to monitor AWS instance termination with Hollowtrees

基于Spring Cloud的微服务业务框架

Generate beautiful documentation for your data pipelines in markdown format

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

An image build orchestrator for the modern web

A non-intrusive Python pipeline.

Automatically scrape data and statistics on Coronavirus to make them easily accessible in CSV format

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

An example project that predicts risk of credit card default using a Logistic Regression classifier and a 30,000 sample dataset.

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Dynamical systems methods for RNA velocity analysis

A library to build and execute typed scientific workflows

A stream processing framework for high-throughput applications.

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

M-Lab ingestion pipeline

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

基于Pipeline实现的JT1078Gateway支持TCP/UDP,目前只支持http-flv、ws-flv、hls三种拉流方式

开源运维平台设计及开发样例、CMS、RBAC、python开发教程、管理系统设计及开发样例、jenkinsfile(pipeline)/ansible使用教程，一切想到的，想不到的，应有尽有

A python framework to process FITS images. Built for Astronomy.

TypeScript/JavaScript utilities for those who don't like utilities

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Old specification for Hack pipes in JavaScript. Please go to the new specification.

Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.

metaGraf is a opinionated specification for describing a software component and what its requirements are from the runtime environment. The mg command, turns metaGraf specifications into Kubernetes resources, supporting CI, CD and GitOps software delivery.

A Kotlin DSL and library to create and plot RNA 2D structures

Simple and flexible ML workflow engine

Pipelines as Code

Transformers Pipeline with KoELECTRA

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

🚦 Run Picard on BAM files and collate 90 metrics into one file.

Example of how to use ElasticSearch ingest-attachment plugin using JavaScript

parallelized blat with multi-threads support

Streamlining SLAM-seq analysis with ultra-high sensitivity