72 Open source projects that are alternatives of or similar to seqfold

waka waka

Precision HLA typing from next-generation sequencing data

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

🔬📚 Galaxy Tool wrappers

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A collection of scripts and notes related to genomics and bioinformatics

Predicting Future Influenza Virus Sequences with Machine Learning

tools for reading, writing, merging, and remapping SNPs

RNAcentral website source code

Python and C++ code for reading and writing genomics data.

Official git repository for Biopython (originally converted from CVS)

Eterna game/RNA design interface

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

Protein Secondary Structure predictor using Convolutional Neural Networks

Analysis pipelines for sequencing data

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

Data intensive science for everyone.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

CoRA Docs

3d engine implementation in DNA code!

Efficient pythonic random access to fasta subsequences

A fast 23andMe genome text file parser, now superseded by arv

Origami Building in threejs

Dockerized Folding@home client with NVIDIA GPU support to help battle COVID-19

A curated list of awesome bioinformatics software.

Fast and flexible ORF finder

Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates

A Java API for high-throughput sequencing data (HTS) formats.

A package for designing activity-informed nucleic acid diagnostics for viruses.

De novo assembly from Oxford Nanopore reads.

Ultrafast sequence typing and gene detection from NGS raw reads

UGENE is free open-source cross-platform bioinformatics software

♥ Essential Functions for DNA Manipulation

ABRA2

A fast 23andMe DNA parser and inferrer for Python

Official code repository for GATK versions 4 and up

A folding minor mode for Emacs

😴 📂 Create and Query a Local Copy of GenBank in R

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

tools for working with genome variation graphs

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Website for the Eterna citizen science game

16,432 Free Yara rules created by

A platform to do RNA science

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

A python wrapper for the benchling api

NexusTK DAT Object Viewer

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

DNA sequence viewer supporting custom, GenBank, FASTA, NCBI accession, and iGEM input.

Find target sites for the miRNAs in genomic sequences

A package for designing compact and comprehensive capture probe sets.

Numerical Encoding for Human Genetic Variants

A Framework for Coalescent Simulation in R

A Go package for engineering organisms.

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Binomica Public Repository for Biological Parts

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.