761 Open source projects that are alternatives of or similar to slamdunk

Genomics Extension for SQLite

A simplified, minimal but powerful Python Git Project development workflow CLI tools.

MOLGENIS - for scientific data: management, exploration, integration and analysis.

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

A curated list of awesome Bioinformatics libraries and software.

A powerful, colorful, beautiful command-line-interface for pypi.org

Post-analysis of immune repertoire sequencing data

Interface for easier topic modelling.

Bioinformatics Workbook repository

Queues the sending of email with Django Q.

Conda recipes for the bioconda channel.

Asynchronous Library made using Python and aiohttp to get proxies from multiple services!

SquiggleKit: A toolkit for manipulating nanopore signal data

Single cell analysis in the browser

GO enrichment with python -- pandas meets networkx

这个脚本主要提供对pypi供应链的源头进行安全扫描研究，扫描并发现未知的恶意包情况。

MyGene.info: A BioThings API for gene annotations

Access domain information via python and command line.

A fast whole-genome aligner based on de Bruijn graphs

Some bits of javascript to transcribe scanned pages using PageXML

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

📊 Graphical User Interface for TCC package

Robust and efficient workflows using a simple language agnostic approach

screenlamp is a Python toolkit for hypothesis-driven virtual screening

Flexible genotype query among 30,000+ samples whole-genome

Multi-omics analysis protocols by Lyu.

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

GNparser normalises scientific names and extracts their semantic elements.

compacted de Bruijn graph construction in low memory

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

🌈Scaffold genome sequence assemblies using linked read sequencing data

TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

Genome inference from a population reference graph

Cira algorithmic trading made easy. A Façade library for simpler interaction with alpaca-trade-API from Alpaca Markets.

LAMBDA – the Local Aligner for Massive Biological DatA

RNA-seq analysis pipeline for detection gene-fusions

Model and predict short DNA sequence features with neural networks

👨‍🏫 BigBlueButton Python API

A library for generating an interactive SVG visualization of CWL workflows

Python helper for Google and IBM Watson speech-to-text cloud APIs.

Support Vector Structural Variation Genotyper

A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor

Yet Another Chimeric Read Detector

A command line tool that creates bibtex entries for IETF RFCs and Internet Drafts.

Analysis pipelines for sequencing data

A Simple , ☁️ Lightweight , 💪 Efficent JSON based database for 🐍 Python. PysonDB-V2 has been released ⬇️

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Validator for SQLAlchemy Models

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

ndjson with the same interface as the builtin json module

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Summer school course materials collection

Bioconductor cheat sheet

pyQms, generalized, fast and accurate mass spectrometry data quantification

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

BioGrakn Knowledge Graph

Differential Gene Correlation Analysis

Next generation sequencing reads de novo assembler.

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.