1355 Open source projects that are alternatives of or similar to Sns

Data intensive science for everyone.

Official code repository for GATK versions 4 and up

UGENE is free open-source cross-platform bioinformatics software

A collection of scripts and notes related to genomics and bioinformatics

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A package for designing compact and comprehensive capture probe sets.

A curated list of awesome bioinformatics software.

An interactive web tool for quality control of DNA sequencing data

A fast 23andMe genome text file parser, now superseded by arv

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

A tool to circularize genome assemblies

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Efficient pythonic random access to fasta subsequences

Assembling the cause of phenotypes and genotypes from NGS data

Antimicrobial Resistance Identification By Assembly

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

Intuitive local web frontend for the BLAST bioinformatics tool

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Python and C++ code for reading and writing genomics data.

Genomics Extension for SQLite

A Java API for high-throughput sequencing data (HTS) formats.

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

A repository for setting up a RNAseq workflow

🔬 BEDOPS: high-performance genomic feature operations

Official git repository for Biopython (originally converted from CVS)

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Rapid large-scale prokaryote pan genome analysis

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

A collection of publications on comparison of high-throughput sequencing technologies.

Provide R access to the NCI Genomic Data Commons portal.

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

An open-access bioinformatics text

Fast alignment and preprocessing of chromatin profiles

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Predict plasmids from uncorrected long read data

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

Fast and flexible ORF finder

A library to build and execute typed scientific workflows

RNASeq pipeline

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

De novo assembly based variant calling pipeline for Illumina short reads

BACNET is a Java based platform to develop website for multi-omics analysis

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

A simplified pipeline for ctDNA sequencing data analysis

Example client programs for Saphetor's VarSome annotation API

A React web application to query and share any PostgreSQL database.

annotate a VCF with other VCFs/BEDs/tabixed files

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Bystro genetic analysis (annotation, filtering, statistics)

Earl Grey: A fully automated TE curation and annotation pipeline

A high-performance, Pythonic language for bioinformatics

An open source platform for managing and analyzing biomedical big data

A modern genome browser built with JavaScript and HTML5.

A fast and sensitive gapped read aligner

Python library to facilitate genome assembly, annotation, and comparative genomics

Ultra-fast and memory-efficient (meta-)genome assembler