442 Open source projects that are alternatives of or similar to SumStatsRehab

Toolkit for processing sequences in FASTA/Q formats

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Scalable genomic data analysis.

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Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Tools for working with genomic and high throughput sequencing data.

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

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Unix, R and python tools for genomics and data science

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List of Computer Science courses with video lectures.

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Scripts to download genomes from the NCBI FTP servers

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BWK awk modified for biological data

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Tools to process and analyze deep sequencing data.

BioGrakn Knowledge Graph

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Simple pure Python SAM parser and objects for working with SAM records

d3 library to build circular graphs

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Bioinformatics containers

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Tools for working with SAM/BAM data

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Python library to facilitate genome assembly, annotation, and comparative genomics

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A curated list of bioinformatics bench-marking papers and resources.

Plant image analysis using OpenCV

Cell type specific enrichments using finemapped variants and quantitative epigenetic data

Ultra-fast and memory-efficient (meta-)genome assembler

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

A scikit-learn compatible library for graph kernels

Market Mix Modelling for an eCommerce firm to estimate the impact of various marketing levers on sales

Open-source bioinformatics components for Dash

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Interactive network visualization in Python and Dash, powered by Cytoscape.js

A comprehensive approach for stock trading implemented using Neural Network and Reinforcement Learning separately.

Efficient pythonic random access to fasta subsequences

Bayesian haplotype-based mutation calling

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

A python library for automated exploratory data analysis

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Therapeutics

A comprehensive library for computational molecular biology

Accurate sample inference from amplicon data with single nucleotide resolution

Social Media Mining Toolkit (SMMT) main repository

An analysis and visualization platform for 'omics data

Fast multi-line FASTA/Q reader in several programming languages

COBRApy is a package for constraint-based modeling of metabolic networks.

Open source Java library for computational proteomics

LAMBDA – the Local Aligner for Massive Biological DatA

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

A tutorial on methods of 16S analysis with QIIME 1

Model and predict short DNA sequence features with neural networks

My own tools code for NGS data analysis (Next Generation Sequencing)

An open-access bioinformatics text

Unsupervised domain adaptation method for relation extraction

Method to optimally select samples for validation and resequencing